PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P19760_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 668aa    MW: 75334.1 Da    PI: 5.8823
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P19760_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.83.5e-22125226199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++ +++a+e+       ++++++  +l+ +d+++ +W++k+i+r++++r++lt+GW+ Fv +++L +gD +v
  GSMUA_Achr2P19760_001 125 FCKILTASDTSTHGGFSVLRRHATEClppldlsQQIPTQ--ELVAKDLHNFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFV 210
                            99****************************987555555..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   + +++ l+v+++r+
  GSMUA_Achr2P19760_001 211 FL--RGECGDLRVGLRRQ 226
                            **..449999*****996 PP
2Auxin_resp99.25.9e-33251330183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t++ F+++Y+Pr+  s+F+v+v+k+++a+k+ +++G+Rfkm+fe+ed++e+r+sGt+vg++d+++ +W++S+WrsLk
  GSMUA_Achr2P19760_001 251 ASHAVTTHTLFTIYYKPRT--SQFIVHVNKYLEAVKNGFALGTRFKMRFEGEDVPEKRFSGTIVGIEDCSS-QWTGSRWRSLK 330
                            689***************6..9**********************************************887.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-39114254IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-38117240IPR015300DNA-binding pseudobarrel domain
CDDcd100174.38E-18124225No hitNo description
PROSITE profilePS5086311.096125227IPR003340B3 DNA binding domain
PfamPF023621.2E-20125226IPR003340B3 DNA binding domain
SMARTSM010192.7E-20125227IPR003340B3 DNA binding domain
PfamPF065071.6E-30251330IPR010525Auxin response factor
PfamPF023099.3E-7531591IPR033389AUX/IAA domain
PROSITE profilePS5174526.02555638IPR000270PB1 domain
SuperFamilySSF542779.51E-12557631No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MAYEAGAWAG GRSEGGGDKL YEELWRACAG PLVEVPRPRE RVFYFPQGHM EQLEASTNQE  60
LDQQIPLFNL PFKILCRVVD VHLKADPETD EVFAQIILQP EPDQHEPTSP DPCLPEQPRP  120
AVYSFCKILT ASDTSTHGGF SVLRRHATEC LPPLDLSQQI PTQELVAKDL HNFEWRFKHI  180
FRGQPRRHLL TTGWSTFVTS KRLVAGDAFV FLRGECGDLR VGLRRQARQQ ATIPTSVISS  240
QSMHLGVLAT ASHAVTTHTL FTIYYKPRTS QFIVHVNKYL EAVKNGFALG TRFKMRFEGE  300
DVPEKRFSGT IVGIEDCSSQ WTGSRWRSLK VQWDEAAGIE RPERVSPWEI EPFDATVLVP  360
NVPQPAVVKC KRSRQASDTA DLSVLEPTAT FWYSRTTDSH DLAAVINTEA ENVEAQVTWP  420
SMQKGCKENN ILFHSNSHEA GLFDWLKEAQ SPIRSSGSLL TGGLLNRFRE TNEATKFNSC  480
PAYSSCMVKE QSVNTNMVTT HFSKVVDPIE HPANLSESVE DSDQKSGLSK ASKEQKHSPQ  540
DSLKEIHGAP NCLSRSRTKV HMQGVAVGRA VDLTILEGYD ELIRELEEMF EIHGELRDRN  600
KWEVVFTDDE DDMMLVGDDP WPEFCNMVRK IFIYPAEEVK KMKPGGRLTP LLHDVEDVCL  660
NKDLKTEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1721835517357Auxin response factor 1
4ldw_A1e-1721835517357Auxin response factor 1
4ldw_B1e-1721835517357Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916GGRSEGGG
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389945.10.0PREDICTED: auxin response factor 11-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLM0S9G70.0M0S9G7_MUSAM; Auxin response factor
STRINGGSMUA_Achr2P19760_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9