PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P19380_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 244aa MW: 27611.2 Da PI: 8.0246

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P19380_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.2	1.4e-16	3	50	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l+ v++ G g+W+t +++ g+ R++k+c++rw +yl GSMUA_Achr2P19380_001 3 RGPWTAEEDEVLASFVRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 50 89****************************99**********97 PP
2	Myb_DNA-binding	51.3	2.8e-16	57	101	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ T++E++++++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr2P19380_001 57 GPITPDEEDIILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 101 678****************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.708	1	50	IPR017930	Myb domain
SuperFamily	SSF46689	4.12E-29	2	97	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-11	2	52	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	3	50	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-22	4	57	IPR009057	Homeodomain-like
CDD	cd00167	3.03E-10	5	50	No hit	No description
PROSITE profile	PS51294	26.02	51	105	IPR017930	Myb domain
SMART	SM00717	1.6E-15	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-15	57	101	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-25	58	106	IPR009057	Homeodomain-like
CDD	cd00167	5.36E-13	58	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MKRGPWTAEE DEVLASFVRR EGEGRWRTLP KRAGLLRCGK SCRLRWMNYL RPSIKHGPIT 60 PDEEDIILRL HRLLGNRWSL IAGRIPGRTD NEIKNYWNTH LSRKLIKQGI DPRTHKPFTF 120 STNPNPTLPS TPPPRHPTAN PDPTPFAPPA PVITGGGYFN VGCQNSEEGR KGADGCTVDF 180 FSDLFDPFIH DDILMQQHHN AVNNHTDNSN SNNKLVEMLD PMGASLVPSF GFEGLWEDPF 240 TYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-26	3	105	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390124.1	0.0	PREDICTED: transcription repressor MYB5-like
Swissprot	Q38850	5e-74	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	M0S9C9	0.0	M0S9C9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P19380_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	4e-72	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]