PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 365aa    MW: 40193 Da    PI: 6.8278
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.47e-181461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr2P18440_001 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                           678*******************************************97 PP
2Myb_DNA-binding48.81.6e-1567110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg ++++E++l++++++ lG++ W++Ia++++ gRt++++k+ w++
  GSMUA_Achr2P18440_001  67 RGTFSQQEEDLIIELHAVLGNR-WSKIAAHLP-GRTDNEIKNLWNS 110
                            899*******************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.668965IPR017930Myb domain
SuperFamilySSF466898.24E-3012108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001671.19E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129420.90666116IPR017930Myb domain
SMARTSM007171.3E-1366114IPR001005SANT/Myb domain
PfamPF002492.1E-1467110IPR001005SANT/Myb domain
CDDcd001671.56E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGGHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEDLIIE LHAVLGNRWS KIAAHLPGRT DNEIKNLWNS CIKKKLRQRG  120
IDPGTHKPLA EVDGGDDNTQ SNSGKNSGTS DLQILVTPQL AMQEPTPSVF APDYGGGRTT  180
SSALPISSNP LLWFSQTSRH LDVTNGDAIS TVAPSLSSTI LSTSMVPAPS CAADDALTNW  240
YGGDCNSSRR SSVEDSGRIV VQSTCSSDSC IFPWPDLTPD KDVQVQLGGE TEDLKWSEYL  300
HGAFVASATP QAPIQPLYGD IKTGNQFPMN CFSTWHQNQQ LQQQLQASDI YGKDFQSVPL  360
GFEHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388093.10.0PREDICTED: transcription factor MYB86-like
TrEMBLM0S9350.0M0S935_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.31e-88myb domain protein 55