PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P18410_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 41aa MW: 4838.14 Da PI: 12.2165 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 30.4 | 5.1e-10 | 11 | 39 | 3 | 31 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLC 31 i n+s r tf kR+ g++KK + L LC GSMUA_Achr2P18410_001 11 IANDSMRRATFKKRKMGLMKKVNKLAMLC 39 89*************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 5.23E-13 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.451 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 0.0072 | 1 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-10 | 11 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 41 aa Download sequence Send to blast |
MARKKVKLAW IANDSMRRAT FKKRKMGLMK KVNKLAMLCI K |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAWIANDSMRRATFKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0S932 | 9e-19 | M0S932_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P18410_001 | 2e-19 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06500.1 | 2e-12 | AGAMOUS-like 96 |