PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr2P18400_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26479.4 Da PI: 8.6301 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.9e-17 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+s r tf kR++g++KK +EL +LC++++++ii++++ GSMUA_Achr2P18400_001 11 IANDSTRRATFKKRKKGLMKKVSELATLCNVKACMIIYGPQE 52 89*************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.89 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.6E-21 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.04E-18 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 1.9E-9 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-23 | 3 | 94 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-17 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-9 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
MARKKVNLAW IANDSTRRAT FKKRKKGLMK KVSELATLCN VKACMIIYGP QEQQPEAWPS 60 AQEAARLLER FKSMPEMEKC RKMMDQEGFL RQRAAKLQEQ LRRQERDNRE LEVSLLMHQA 120 VAGRSLYDVN IEDATSLAWM VDAKLKSVQD RINQQTTQLA LRSAAESSAT SQVTAKDPIE 180 MAMDSLQRQN WLLDAMHPSE NVIFGGGGGE EIMPISCVEH NSSWLDLYFP FN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 2 | 24 | RKKVNLAWIANDSTRRATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009388101.1 | 1e-174 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-45 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | M0S931 | 1e-172 | M0S931_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P18400_001 | 1e-173 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP363 | 36 | 202 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-47 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
---|---|---|---|
|