PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18400_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26479.4 Da    PI: 8.6301
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.9e-171152344
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                           i n+s r  tf kR++g++KK +EL +LC++++++ii++++ 
  GSMUA_Achr2P18400_001 11 IANDSTRRATFKKRKKGLMKKVSELATLCNVKACMIIYGPQE 52
                           89*************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.89149IPR002100Transcription factor, MADS-box
SMARTSM004326.6E-21160IPR002100Transcription factor, MADS-box
CDDcd002662.04E-18285No hitNo description
PRINTSPR004041.9E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-23394IPR002100Transcription factor, MADS-box
PfamPF003193.2E-171152IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MARKKVNLAW IANDSTRRAT FKKRKKGLMK KVSELATLCN VKACMIIYGP QEQQPEAWPS  60
AQEAARLLER FKSMPEMEKC RKMMDQEGFL RQRAAKLQEQ LRRQERDNRE LEVSLLMHQA  120
VAGRSLYDVN IEDATSLAWM VDAKLKSVQD RINQQTTQLA LRSAAESSAT SQVTAKDPIE  180
MAMDSLQRQN WLLDAMHPSE NVIFGGGGGE EIMPISCVEH NSSWLDLYFP FN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAWIANDSTRRATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388101.11e-174PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-45AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLM0S9311e-172M0S931_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18400_0011e-173(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-47AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]