PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 367aa    MW: 39433.4 Da    PI: 9.0385
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30156214259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r a+d++v+++tYeg+Hnh+
  GSMUA_Achr2P18390_001 156 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRYADDKTVLITTYEGKHNHP 214
                            7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-33140216IPR003657WRKY domain
SuperFamilySSF1182907.19E-28148216IPR003657WRKY domain
PROSITE profilePS5081130.194150216IPR003657WRKY domain
SMARTSM007741.6E-35155215IPR003657WRKY domain
PfamPF031067.1E-27157214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MLDQLTESYT ALHSQLLPAV QQKEHEIYRW QRIHLCKFIF VRHLRCLIPS QKDGKTGVAR  60
QGEPSAHQIM EHGPARMRMI HGNSEDGDGE HSSSLNIISS DRGIIPSAET QHSQVDGSSE  120
NPNLTQETSS TATPSDLSNR RARVSVRARS DAPMISDGCQ WRKYGQKMAK GNPCPRAYYR  180
CTMATGCPVR KQVQRYADDK TVLITTYEGK HNHPLPPAAK AMANTTSAAA AMLLSGSTTS  240
KDSLVASANG FLHPHILYDS TMATLSASTS FPTITLDLTK SANPIQQLLQ RAHPTHGPRQ  300
QAVVESVTAA ITTDPNFTAA LTAAITSIMG APTSSTGAGG SNVPSAGAHM VPGSPQLPKP  360
CTTFSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-22142218176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388109.10.0PREDICTED: probable WRKY transcription factor 47 isoform X1
RefseqXP_009388114.10.0PREDICTED: probable WRKY transcription factor 47 isoform X2
SwissprotQ9XEC35e-68WRK42_ARATH; WRKY transcription factor 42
TrEMBLM0S9300.0M0S930_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18390_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.13e-52WRKY family protein