PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P18110_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | B3 | ||||||||
Protein Properties | Length: 214aa MW: 23942.7 Da PI: 8.3188 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.4e-10 | 138 | 194 | 41 | 99 |
TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 41 esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +r+W++k++ ++ +r l +GWk+F+ + +Lk+gD +v++l+++++ ++v+++r+ GSMUA_Achr2P18110_001 138 YGNRTWKMKYSCKGILRR--LCSGWKNFALDTDLKVGDGCVLELMDSNNILFKVQILRR 194 4679******77777777..889********************9988777788888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-14 | 98 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-11 | 99 | 194 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.982 | 102 | 195 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.06E-13 | 109 | 193 | No hit | No description |
Pfam | PF02362 | 4.2E-8 | 130 | 194 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MTRSGGRFAE ATNRSEEKEN NETGILLFFV IFLISFSPSA WFLVCGEEKS SNCILRISLC 60 RLSMDSSRGK NCESGDAELS PTEPPASAEK NEIVPLSGKP FLTFVVSWSH VHDPYQVLFP 120 KRFYPFLPAT CVPVTLSYGN RTWKMKYSCK GILRRLCSGW KNFALDTDLK VGDGCVLELM 180 DSNNILFKVQ ILRRGVVPVK RDKGLSCDAP ISID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009388412.1 | 1e-109 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
Refseq | XP_018676857.1 | 1e-109 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | M0S902 | 1e-156 | M0S902_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P18110_001 | 1e-157 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |