PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P18090_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 303aa    MW: 33909.9 Da    PI: 4.4094
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P18090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.31.8e-181663148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr2P18090_001 16 KGSWTPEEDLRLIAYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYL 63
                           799*****************************99************97 PP

2Myb_DNA-binding53.45.9e-1769114148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE++ +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  GSMUA_Achr2P18090_001  69 RGNFTEEEEDNIIKLHGLLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                            89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-25766IPR009057Homeodomain-like
PROSITE profilePS5129416.9451163IPR017930Myb domain
SuperFamilySSF466892.93E-3113110IPR009057Homeodomain-like
SMARTSM007172.2E-141565IPR001005SANT/Myb domain
PfamPF002495.9E-171663IPR001005SANT/Myb domain
CDDcd001678.68E-111863No hitNo description
PROSITE profilePS5129427.03464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2767118IPR009057Homeodomain-like
SMARTSM007172.2E-1568116IPR001005SANT/Myb domain
PfamPF002498.7E-1669114IPR001005SANT/Myb domain
CDDcd001671.57E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009809Biological Processlignin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRGRAPCCA KVGLNKGSWT PEEDLRLIAY IQKHGHGNWR ALPKLAGLLR CGKSCRLRWI  60
NYLRPDIKRG NFTEEEEDNI IKLHGLLGNK WSKIASHLPG RTDNEIKNVW NTHLKKRLAF  120
KEQNNPEEAL SSSSSSTLPS CSDQVIEIPI EPDVDLWSML DEEPRGSTMI ISSASSTELS  180
AMNHGVDPEV VPDVLIDPDI WSMIEDEDAC SLTWEGLQSN NSFAVEEESN REGNDGEWLE  240
YLEKELGLRE AAAVEDQGSP LRGAVEQPCP WVEREDGDTV SCYLQEGPSC PSRSDRLEIV  300
LID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00144DAPTransfer from AT1G16490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388416.10.0PREDICTED: myb-related protein Zm1
SwissprotP200248e-84MYB1_MAIZE; Myb-related protein Zm1
TrEMBLM0S9000.0M0S900_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P18090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.19e-75myb domain protein 58
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]