PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P17580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 300aa    MW: 33103.9 Da    PI: 10.4543
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P17580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.6e-32234291359
                            -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            D y+WrKYGqK++kgs++pr+YY+C+s  gCp+kk+ver+ edp+++++tYegeHnh+
  GSMUA_Achr2P17580_001 234 DDYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPAKKHVERCLEDPSMLIVTYEGEHNHT 291
                            99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.5E-16191230IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.3E-34220292IPR003657WRKY domain
PROSITE profilePS5081129.654227293IPR003657WRKY domain
SuperFamilySSF1182902.35E-27230291IPR003657WRKY domain
SMARTSM007746.9E-38232292IPR003657WRKY domain
PfamPF031064.4E-27234290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVGSSIHAPP IHPPFSSLLT LVESTSSEIL SALLIKISCN LLKRAPISGA FELNSIVKIW  60
VIQGVVSRNG ANQDQSRKLA AQTGEAVAAF KRVVSLLSDS AREARFRTVN KQNNQTYRLQ  120
QQMNIQADML RRSSNGISIK FDSSDCTPSA STSMNGKITS LEGKVFHLIE GHASSNPVNP  180
HPPPKKTSMV KGEDNNGKCP NNGRCHCSRK RKLRIKRSIK VPAVSEKLAD IPPDDYSWRK  240
YGQKPIKGSP HPRGYYKCSS IRGCPAKKHV ERCLEDPSML IVTYEGEHNH TKLHTQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21225290771WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388474.11e-143PREDICTED: probable WRKY transcription factor 21
SwissprotO043367e-67WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLM0S8U90.0M0S8U9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P17580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-61WRKY DNA-binding protein 21