PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P16660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 273aa    MW: 31586.5 Da    PI: 5.5539
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P16660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.29.6e-321869103
                            HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
           HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                            ++ed+e++ ++sws   nsf+v+d+++fa+ +LpkyFkhsnf+SF+RQLn+YgF+kv+ ++         weF++  F +g+k+ll++
  GSMUA_Achr2P16660_001   1 MVEDAETDAVVSWSGARNSFIVWDSHRFATALLPKYFKHSNFSSFIRQLNTYGFRKVDPNR---------WEFANADFLAGQKHLLKN 79 
                            89************999****************************************9998.........****************** PP

                            XXXXXXX CS
           HSF_DNA-bind  97 ikrkkse 103
                            ikr++++
  GSMUA_Achr2P16660_001  80 IKRRRNT 86 
                            ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-32183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.4E-44183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.26E-29183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVEDAETDAV VSWSGARNSF IVWDSHRFAT ALLPKYFKHS NFSSFIRQLN TYGFRKVDPN  60
RWEFANADFL AGQKHLLKNI KRRRNTEVDR MRRDRNVLML EIVKLRQRQQ SSRAQLLEMQ  120
RRMQVTERRQ QQTMSFLGRA LRNPAFVRQL ALRGEQQRQL NSAGKKRRLP ATPSSEDLPA  180
IEDLLLSTMD DDEGSSSDIG QRDESTVEQG ASVTNDLTWE ELLNESKLMG GETEDDEQSE  240
VEVEVEALAA EQLEWGEDMK DLVKQMGYMK SKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-2318327120Heat shock factor protein 1
5d5u_B2e-2318336129Heat shock factor protein 1
5d5v_B2e-2318336129Heat shock factor protein 1
5d5v_D2e-2318336129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682LKNIKRR
28392RNTEVDRMRR
38994RMRRDR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388571.10.0PREDICTED: heat shock factor protein HSF30-like
SwissprotP411522e-86HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLM0S8K70.0M0S8K7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P16660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.12e-73heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]