PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P16200_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 205aa MW: 23618.7 Da PI: 8.3651

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P16200_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.8e-16	5	52	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv+ v ++G ++W+ a+ g++Rt+k+c++rw +yl GSMUA_Achr2P16200_001 5 KGPWTEQEDLQLVCFVGLFGDRRWDFLAKVTGLNRTGKSCRLRWVNYL 52 79********************************************97 PP
2	Myb_DNA-binding	54.9	2.1e-17	58	103	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr++++E+ l +d++ ++G++ W++Iar+++ gRt++++k++w++++ GSMUA_Achr2P16200_001 58 RGRMSPQEERLVLDLHSRWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 103 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.001	1	52	IPR017930	Myb domain
SuperFamily	SSF46689	3.22E-28	3	99	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-14	4	54	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-15	5	52	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-18	6	59	IPR009057	Homeodomain-like
CDD	cd00167	7.16E-10	7	52	No hit	No description
PROSITE profile	PS51294	25.641	53	107	IPR017930	Myb domain
SMART	SM00717	5.2E-16	57	105	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-15	58	102	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-23	60	106	IPR009057	Homeodomain-like
CDD	cd00167	1.04E-10	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MVMRKGPWTE QEDLQLVCFV GLFGDRRWDF LAKVTGLNRT GKSCRLRWVN YLHPGLKRGR 60 MSPQEERLVL DLHSRWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KKKASPSSSS 120 SSSLNSSSSC SSLTAALGEI DDAAVSGYPM DQIWNEIAAP DMIGELSFEE CKDEACDISR 180 LTMPSPTWEY CSYSLWKIDD DDFQA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	3e-28	5	107	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-27	5	107	58	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-27	5	107	58	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	3e-28	5	107	4	105	C-Myb DNA-Binding Domain
1msf_C	3e-28	5	107	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009388630.1	1e-136	PREDICTED: myb-related protein MYBAS2 isoform X2
Swissprot	Q4JL76	5e-84	MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBL	M0S8G1	1e-151	M0S8G1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P16200_001	1e-151	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	1e-76	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]