PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P15200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 532aa    MW: 57696.1 Da    PI: 6.6807
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P15200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30296354259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed +++++tYeg+Hnh+
  GSMUA_Achr2P15200_001 296 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtACPVRKQVQRCAEDRSILITTYEGTHNHP 354
                            7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-33280356IPR003657WRKY domain
SuperFamilySSF1182901.57E-27288356IPR003657WRKY domain
PROSITE profilePS5081128.713290356IPR003657WRKY domain
SMARTSM007745.0E-36295355IPR003657WRKY domain
PfamPF031061.5E-26297354IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MDEGGTTRGR GLTLNTSPPL FLSPPLDHGG DPRRPQPMES DRYRHRSGEN RPVVNEMDFF  60
SDERWKAVSK VEPDLDLKVT REDLTINTGL NLLTANAGSD QSTVDDGMSP ADDSKENKSE  120
LAAMQAELAR TKEENQKLNE TLNQLTASYN ALQMHLIALM QQQHQPKRDP QAHEAADEKG  180
QATNHEHGGV LVPRQFMDLG PAAEADEPSH SSTASRDQPS SPPDNVEVGS KDRQLHKQIA  240
RPDRAKSSRE DSPDQGWNPS KDPKLSPSKS TEQVQEAIMR KARVSVRARS EAPMITDGCQ  300
WRKYGQKMAK GNPCPRAYYR CTMATACPVR KQVQRCAEDR SILITTYEGT HNHPLPPAAM  360
AMASTTSAAV SMLLSGSMSS PEGLMNPNFL ARTILPYSSS MATISASAPF PTVTLDLTHN  420
TNALQLQRPP AQFPLSFPGM PVGMEAAHLL HPKAQSALPS TLADTVSAAT AAITADPNFT  480
AALAAAISSI ISGNHQSASN YDDNKSSANK TSSDGNNNKD DNPSRSNFRA TQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20282358176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388735.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-131WRK42_ARATH; WRKY transcription factor 42
TrEMBLM0S8610.0M0S861_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P15200_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-110WRKY family protein