PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P15020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family FAR1
Protein Properties Length: 503aa    MW: 57384 Da    PI: 8.4146
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P15020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA41.22.3e-132662135
                   GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C  Cg +   Tp++Rrgp+g++tLCnaCG+ + k +l
  GSMUA_Achr2P15020_001 26 CIRCGISAnaTPHMRRGPEGPRTLCNACGIAWTKGKL 62
                           5567766667***********************9876 PP
2FAR188.11.3e-2796181188
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                            +fYn+YA +vGFsvrks+s ks++n  + +rtfvCs++g+r+++k + ++ +r+r+etr+gC a++++k + +gk++vt++  eHnH+
  GSMUA_Achr2P15020_001  96 EFYNKYAGHVGFSVRKSSSGKSSENV-TRSRTFVCSRQGFRKDKKGA-KEVKRPRPETRIGCLARMTIKITPSGKYRVTEFIGEHNHQ 181
                            6********************96555.99**************9999.999************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.76E-102076No hitNo description
SMARTSM004019.5E-72075IPR000679Zinc finger, GATA-type
CDDcd002021.22E-62564No hitNo description
Gene3DG3DSA:3.30.50.106.3E-112564IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.3E-112862IPR000679Zinc finger, GATA-type
PfamPF031011.2E-2496181IPR004330FAR1 DNA binding domain
PfamPF044347.1E-7355399IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.089355402IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-6377404IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MQFEQDQDLE VHDNTGDDRS EVPPRCIRCG ISANATPHMR RGPEGPRTLC NACGIAWTKG  60
KLRRMIDSNS PAYEITMAKL VPEIDMEFES EEKAYEFYNK YAGHVGFSVR KSSSGKSSEN  120
VTRSRTFVCS RQGFRKDKKG AKEVKRPRPE TRIGCLARMT IKITPSGKYR VTEFIGEHNH  180
QPAPPSTTHM LRSQRITIEL QAAEADLSDD SATTPKTTAM LEKYDLRNNE WLLKLFEDRD  240
KWALPYGRDI FCADMKSSLQ TESLSGVLKK FLSPQLDLLS FFKHYERVLD EHRYAELQAD  300
FHASQSFPRI PPSKLLRQAA NVYTPVIFEV FRKEFEMFMD CMLFSCGEVQ TISEYKVVVT  360
EKPREHYVRF DSRDCSAYCS CKKFEFTGIQ CCHVLKVLDF RNIKELPLKY YLKRWKKDAK  420
SGSEGGNRVI ATDSDPKSPT SSSLSVPVPS YTQQQGFHGM SHFGQDSSVS DLHQDSFQAN  480
TQLNQVVAQT HGPWSLVTRA NSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144148KRPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678050.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X3
TrEMBLM0S8430.0M0S843_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P15020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-34FAR1-related sequence 5