PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P14770_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 297aa    MW: 33064.6 Da    PI: 7.5639
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P14770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT eEd++l++ ++ +G g+Wkt ++  g++R+ k+c++rw +yl
  GSMUA_Achr2P14770_001 14 KGSWTSEEDQKLIQFIQNHGHGSWKTLPKLAGLNRCCKSCRLRWTNYL 61
                           799*******************************************97 PP

2Myb_DNA-binding52.51.1e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ ++eE+   ++++  +G++ W+tIa++++ gRt++++k++w++++
  GSMUA_Achr2P14770_001  67 RGKLSPEEENTVLHLHSIHGNR-WSTIAAHLP-GRTDNDIKNFWNSLK 112
                            7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.41961IPR017930Myb domain
SuperFamilySSF466892.58E-2911108IPR009057Homeodomain-like
SMARTSM007174.5E-141363IPR001005SANT/Myb domain
PfamPF002492.6E-151461IPR001005SANT/Myb domain
CDDcd001671.56E-111661No hitNo description
PROSITE profilePS5129425.99962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2465115IPR009057Homeodomain-like
SMARTSM007179.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.1E-1567112IPR001005SANT/Myb domain
CDDcd001675.34E-1271111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGRSPCCDGN DLKKGSWTSE EDQKLIQFIQ NHGHGSWKTL PKLAGLNRCC KSCRLRWTNY  60
LRPDIKRGKL SPEEENTVLH LHSIHGNRWS TIAAHLPGRT DNDIKNFWNS LKKKKKKPIC  120
TSTDPMTNRT STELFASLLP HLALASHKEI MERSSWDDYG GHLQAEAIKL AKLQFLDYLL  180
QSATPVVTSG SSNSIIFSEM EPMELANTPM PWPASLPSPC PSPLFGSPAV HQNLPGTSRS  240
FEHPLINDRK GEDMMTSMVS SPTLPPLHDA SWGNEAVCTT CSHGVAPSIW PDDPLYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26111154107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117LKKKKKKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389736.10.0PREDICTED: myb-related protein Hv1-like
SwissprotQ9S9Z28e-75MYB93_ARATH; Transcription factor MYB93
TrEMBLM0S8180.0M0S818_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P14770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.16e-68myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]