PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P13930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 329aa    MW: 35663.1 Da    PI: 4.885
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P13930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-153990146
                           TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46
                           +g+WT+ Ed +lv+ v+++G g        W++ a+ ++ gRt++++k++w++
  GSMUA_Achr2P13930_001 39 KGPWTPAEDAILVEHVRRHGEGnwnalgnKWARMAAQLP-GRTDNEIKNYWNT 90
                           79*************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.9763496IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-203595IPR009057Homeodomain-like
SuperFamilySSF466894.67E-133697IPR009057Homeodomain-like
SMARTSM007178.4E-153894IPR001005SANT/Myb domain
PfamPF002497.1E-143990IPR001005SANT/Myb domain
CDDcd001676.12E-134192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTGEEGGEPS TVEQAVAKGS AVGEGGKKGG GRGGEGLKKG PWTPAEDAIL VEHVRRHGEG  60
NWNALGNKWA RMAAQLPGRT DNEIKNYWNT RLKRRQRAGL PIYPPEMHDD ARLDGHHHHD  120
PQRQVNTTSP VTLRQLAAEL PSLQLPPLVD PIAFRPLSGI TLSPFPQNPF ASQLGLGFPP  180
SPASQPPTPT SLFQPPQQLG LGNYAMNQPP PFSPAFAVKM ELPSCQLFAE PVGRSDEPSS  240
CGLLEALLQD TQTIEDMKIA ELLELQEADE EGTRWEQLFC DRGNDGEGIK ETSQGCSSAK  300
FEGFDCCMGE AYKPNPSVSV SCLVIMSSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430GGKKGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388878.10.0PREDICTED: transcription factor MYB104-like
RefseqXP_018677666.10.0PREDICTED: transcription factor MYB104-like
TrEMBLM0S7T40.0M0S7T4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P13930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.18e-30myb domain protein 33