PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P13440_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 209aa MW: 22280.2 Da PI: 8.1442 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 89.1 | 5.6e-28 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++ Cvl+p++ +++q++++ +v+k+ G+s++l++l+++p ++r++a++sl+yeA+ r+ +Pv+Ga+g+++++ GSMUA_Achr2P13440_001 2 SCSGCRVLRKGCSDTCVLRPCIqwidgADAQAHATVFVAKFVGRSTLLSFLSSVPLSHRPAAFRSLLYEACGRTINPVNGATGLLWTG 89 6*********************9999777899******************************************************** PP DUF260 84 qqqleqlkaela 95 +++l+q++++++ GSMUA_Achr2P13440_001 90 NWHLCQAAVDTV 101 *******99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.701 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSCSGCRVLR KGCSDTCVLR PCIQWIDGAD AQAHATVFVA KFVGRSTLLS FLSSVPLSHR 60 PAAFRSLLYE ACGRTINPVN GATGLLWTGN WHLCQAAVDT VLGGGTIRPL LELGGDADVE 120 ELYRYQKGGA SSSSSSPPRK RTKDPESKVT PKFDLDLCLM PRSPEAQGKG NWRASTPSAT 180 SESSVTTTNE GCAGDKTAEE KPTLLNLFA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009388922.1 | 1e-153 | PREDICTED: LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 2e-63 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | M0S7N5 | 1e-152 | M0S7N5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P13440_001 | 1e-153 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 6e-65 | LOB domain-containing protein 38 |