PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P13320_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 276aa MW: 30453.3 Da PI: 7.8978 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.5 | 5.4e-32 | 73 | 126 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ GSMUA_Achr2P13320_001 73 PRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 126 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.29E-15 | 70 | 127 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-28 | 71 | 127 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-23 | 73 | 126 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-7 | 74 | 125 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MATVFPDLSL HISPPSISTG HAEPTLSLGL QAPASSLTNH HDCHHHHHLH HPQIYGFKRN 60 PRPARGKKSL RAPRMRWTTT LHAHFVHAVE LLGGHERATP KSVLELMNVK DLTLAHVKSH 120 LQMYRTVKST DRGAAAQGQA DMGFSQRTGL EEVEGDVPSG KAGDDITPCY DFPITPTPAT 180 PLPKSSRELH PSTAGSGWNP SNKQNSSSYL YFRNDNLLSN DNQVLGQDHL LTQSQVVVPN 240 VELISMPTAH TDLRAFSKLP DLEITLGRHG WQMECL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-17 | 74 | 128 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:19054366, ECO:0000269|PubMed:20444210}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018677480.1 | 0.0 | PREDICTED: probable transcription factor RL9 isoform X2 | ||||
Swissprot | Q9FJV5 | 1e-43 | KAN4_ARATH; Probable transcription factor KAN4 | ||||
TrEMBL | M0S7M3 | 0.0 | M0S7M3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P13320_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3742 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42630.2 | 1e-45 | G2-like family protein |
Publications ? help Back to Top | |||
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