PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P13040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 296aa    MW: 32817.7 Da    PI: 10.1147
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P13040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.34.8e-10555146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                           +++WT++E+  l+ +v ++G+g W+tI +          R+  ++k++w++
  GSMUA_Achr2P13040_001  5 KQKWTPDEEAALKAGVLKHGPGKWRTILKDQEfsgvlCMRSNVDLKDKWRN 55
                           79***************************99998999889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.499161IPR017930Myb domain
SuperFamilySSF466899.36E-15269IPR009057Homeodomain-like
SMARTSM007172.4E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-13456IPR009057Homeodomain-like
PfamPF002494.1E-8555IPR001005SANT/Myb domain
CDDcd116601.12E-16656No hitNo description
SuperFamilySSF467857.07E-16119198IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005267.6E-13119184IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.252121189IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-14123191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005388.5E-9125182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGAPKQKWTP DEEAALKAGV LKHGPGKWRT ILKDQEFSGV LCMRSNVDLK DKWRNMSVTA  60
YGWGSRERAR IALKKSRQIS KHDGTPMSIS TVVKDIDNEI VDVKPLAMSS EPLQITGQKR  120
TISRFDDLIL EAISNLKEPT GSNKTAIALY IEDHYWPPTD SKQLLSAKLK ALTACGRLIK  180
VKRKYRIAPT SAFSEEKSSK FLLLEGRQKE PRVDIKSLSK SQVDSELTRM RNMTAQEAAA  240
FAAQAVAEAE AAMAEAEQAA REAEIAEADA EAAQAFAEAA MLTLKNRNAT KRMIRV
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388966.10.0PREDICTED: single myb histone 6
SwissprotC0HIA32e-90SMH6_MAIZE; Single myb histone 6
TrEMBLM0S7J50.0M0S7J5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P13040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.36e-74telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]