PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P12990_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 378aa MW: 41222.9 Da PI: 6.6392 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.8 | 1.2e-35 | 69 | 178 | 2 | 102 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.ea 75 g+kdrhsk++T++g+RdRR+Rls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai el+ + + ++ +++ + GSMUA_Achr2P12990_001 69 SGGKDRHSKVYTAKGLRDRRIRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAINELPPLdcfpkppdpcgdeTMNADRDVePS 156 689*************************************************************988666666555422222333322 PP TCP 76 esssssasnsssgkaaksaakskksqk 102 +++++++++s+++ ++s+ ++ GSMUA_Achr2P12990_001 157 YDQQQQQQHPSNKSGCSSSS-----DT 178 22233333333332222222.....22 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.4E-35 | 70 | 178 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.925 | 71 | 129 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MELEENNHAC KRSWAAGNGG QAAKIGRTEH QDEDEEDGER KGGGGADTSR WGPWQHHPSS 60 RIFRVSRASG GKDRHSKVYT AKGLRDRRIR LSVSTAIQFY DLQDRLGYDQ PSKAIEWLIK 120 AAAAAINELP PLDCFPKPPD PCGDETMNAD RDVEPSYDQQ QQQQHPSNKS GCSSSSDTSK 180 GSVLDDSGYI VASHHRNLNP QTSSFTELLT GGISNADYFG QDCLFAQSQR SHPLPSGFSS 240 QSHFGNSSPM GMLSFNIAAA GDHPEMQQFS SLQDHLFPFA ATGNYNHNFS ISSGLAGFNR 300 GTLQSNSPAH LPQLHHDSHN HLQRLSSTVD GSNLQFFFGS AAAAANAENQ LPAAFDGRLQ 360 LYYGDGYRHS DLKGKGKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-26 | 76 | 130 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 2e-26 | 76 | 130 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009388968.1 | 0.0 | PREDICTED: transcription factor PCF6-like | ||||
Refseq | XP_018678109.1 | 0.0 | PREDICTED: transcription factor PCF6-like | ||||
Swissprot | Q10CE8 | 5e-66 | PCF6_ORYSJ; Transcription factor PCF6 | ||||
TrEMBL | M0S7J0 | 0.0 | M0S7J0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P12990_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 8e-39 | TCP family protein |