PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P12730_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GATA | ||||||||
Protein Properties | Length: 228aa MW: 24503.9 Da PI: 8.1404 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.4 | 4e-18 | 157 | 191 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l GSMUA_Achr2P12730_001 157 CSHCLSQKTPQWRAGPLGPKTLCNACGVRFKSGRL 191 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.082 | 151 | 187 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.2E-16 | 151 | 205 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 8.08E-15 | 153 | 215 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 7.8E-14 | 155 | 189 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.36E-13 | 156 | 203 | No hit | No description |
Pfam | PF00320 | 6.8E-16 | 157 | 191 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 157 | 182 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAACIMEFTT SLALPSSSSS SSSSSSSSFV LCLWLVVQLK MDTCNKSSSA GSSLLEEFIP 60 GDNMVEGEDE SLEWLSIYVE DCLSGATSYT TTTTTTTISK PLPPTARLPQ NPDPKPSCRS 120 LASELILPIK EEGGKTAAAG GGRVGEEEKV VVQPRRCSHC LSQKTPQWRA GPLGPKTLCN 180 ACGVRFKSGR LLPEYRPAKS PTFVSYKHSN SHKKVMEMRM ALLSSNST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389002.1 | 1e-113 | PREDICTED: GATA transcription factor 12-like | ||||
Swissprot | Q8L4M6 | 2e-42 | GATA3_ARATH; GATA transcription factor 3 | ||||
TrEMBL | M0S7G4 | 1e-165 | M0S7G4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P12730_001 | 1e-166 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34680.2 | 8e-38 | GATA transcription factor 3 |
Publications ? help Back to Top | |||
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