PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P12310_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SRS

Protein Properties

Length: 317aa MW: 33252.8 Da PI: 7.0695

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P12310_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.8	2.5e-67	102	242	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 g++sCqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaakrrerqq+laaa a++ ++++re+ +++ ++ t+ GSMUA_Achr2P12310_001 102 GGGMSCQDCGNQAKKDCSHMRCRTCCKSRGFQCSTHVKSTWVPAAKRRERQQHLAAA--------ASSLQQQPREM--TTHLSTVITT 179 5789************************************************997........45667788886..6777788888 PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ss++s++ s+P+evss+avfrcvrvs +dd e+e+aYqtavsigGhvfkGiLyd+G++ GSMUA_Achr2P12310_001 180 ASSGSSSTCRGEVSFPAEVSSPAVFRCVRVSPLDDTEDEFAYQTAVSIGGHVFKGILYDHGPD 242 8999999999999**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-63	104	242	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.7E-27	106	148	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.3E-25	194	241	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAGFSLGGGN RQGGGDEGIP PESLFLYGSG SGVGGNRTEE IGYGRGFELW QQHQQQIHRQ 60 QPQQQQQQLY ISSTAGLLSF SDEPLQPGGS IERTVSLRDS GGGGMSCQDC GNQAKKDCSH 120 MRCRTCCKSR GFQCSTHVKS TWVPAAKRRE RQQHLAAAAS SLQQQPREMT THLSTVITTA 180 SSGSSSTCRG EVSFPAEVSS PAVFRCVRVS PLDDTEDEFA YQTAVSIGGH VFKGILYDHG 240 PDVPTPSTPL ALHGESSSSA AAASISTAAA LATGLAAPSS SATAAASTGS MDPSALYPTP 300 LSAFMAGTQF FPHHPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355643	7e-41	AK355643.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023M22.
GenBank	AK363554	7e-41	AK363554.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016K14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389067.1	1e-162	PREDICTED: protein SHI RELATED SEQUENCE 1
Refseq	XP_018677664.1	1e-162	PREDICTED: protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	2e-69	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	M0S7C2	0.0	M0S7C2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P12310_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	9e-58	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]