PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P11910_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 640aa MW: 70339.3 Da PI: 9.8173 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.7 | 2.3e-26 | 91 | 236 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................................................. 38 rW++qe+laL+++r++m++++r++ lk+plWeevs+ + GSMUA_Achr2P11910_001 91 RWPRQETLALLQIRSDMDSAFRDATLKGPLWEEVSRSLplvsqcvilslsyiipffrsqpilirqiisldrclrfpdaksciprgrli 178 8*************************************************************************************** PP trihelix 39 ...........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +e g++rs+k+Ckek+en++k+yk++k+g+ +r++++s +++f+qlea GSMUA_Achr2P11910_001 179 afnfllspsklAELGYKRSAKKCKEKFENVHKYYKRTKDGRAGRQDGKS--YRFFSQLEA 236 *******************************************866665..*******85 PP | |||||||
2 | trihelix | 106.9 | 1.4e-33 | 414 | 499 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+ +++++ ++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+k+++k r +++s+tcpyf+ql+a GSMUA_Achr2P11910_001 414 RWPKTEVHALINLRSGLDSKYHEAGPKGPLWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKVKDSNKHR-PDDSKTCPYFHQLDA 499 8********************************************************************86.9************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.112 | 84 | 129 | IPR017877 | Myb-like domain |
CDD | cd12203 | 5.53E-20 | 90 | 216 | No hit | No description |
Pfam | PF13837 | 9.3E-10 | 188 | 237 | No hit | No description |
PROSITE profile | PS50090 | 7.433 | 407 | 471 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-4 | 410 | 470 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 4.87E-30 | 413 | 478 | No hit | No description |
Pfam | PF13837 | 1.4E-22 | 413 | 500 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 640 aa Download sequence Send to blast |
MQQQGGSRYG VPPCEMTPFS PEPPASRAHL LGIPGPEPLQ DPPLAEAPSP LSSRPPAANF 60 DELAPGAAGG NFPEDDGEGG ERGGSGATGN RWPRQETLAL LQIRSDMDSA FRDATLKGPL 120 WEEVSRSLPL VSQCVILSLS YIIPFFRSQP ILIRQIISLD RCLRFPDAKS CIPRGRLIAF 180 NFLLSPSKLA ELGYKRSAKK CKEKFENVHK YYKRTKDGRA GRQDGKSYRF FSQLEALHGG 240 SSGGGGGATG MAGPPASRAQ PISAVAPSTL TSQEGRKRKR GGGDSGSSRK MMAFFDRLMK 300 QVMERQEAMQ QRFLDAIEKR EQDRMIRDEA WRRQEMTRLN REQELLAQER AMAASRDTAI 360 ISYLQKLSGQ TIPMPTMPAT PQQQQRPPAS LVLNTEPQDA EDGVNLEPMS SSSRWPKTEV 420 HALINLRSGL DSKYHEAGPK GPLWEEISAG MQRLGYNRSA KRCKEKWENI NKYFKKVKDS 480 NKHRPDDSKT CPYFHQLDAL YRNRLLGSGS NVGTQRQEGQ EVNPASNQQQ SGAPMNLSST 540 PPLHQPPAEA ESKNEKNCSN NSGCDGNSEG GGGSNAIQAQ TGNGGLPSSF FDEGLKKVSA 600 TPPLSLPTNL CIFAGDIITW WIDAALKTVR QHGQRRGGRR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 194 | 202 | KRSAKKCKE |
2 | 274 | 280 | GRKRKRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111742 | 1e-59 | AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence. | |||
GenBank | AP004839 | 1e-59 | AP004839.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519A12. | |||
GenBank | AP004868 | 1e-59 | AP004868.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0048B08. | |||
GenBank | AP014958 | 1e-59 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-59 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389115.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1 isoform X1 | ||||
Refseq | XP_009389116.1 | 0.0 | PREDICTED: trihelix transcription factor GTL1 isoform X2 | ||||
Swissprot | Q39117 | 7e-73 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | M0S782 | 0.0 | M0S782_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P11910_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 9e-79 | Trihelix family protein |