PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P11910_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 640aa    MW: 70339.3 Da    PI: 9.8173
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P11910_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.72.3e-2691236187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................................................. 38 
                            rW++qe+laL+++r++m++++r++ lk+plWeevs+ +                                                  
  GSMUA_Achr2P11910_001  91 RWPRQETLALLQIRSDMDSAFRDATLKGPLWEEVSRSLplvsqcvilslsyiipffrsqpilirqiisldrclrfpdaksciprgrli 178
                            8*************************************************************************************** PP

               trihelix  39 ...........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                                       +e g++rs+k+Ckek+en++k+yk++k+g+ +r++++s  +++f+qlea
  GSMUA_Achr2P11910_001 179 afnfllspsklAELGYKRSAKKCKEKFENVHKYYKRTKDGRAGRQDGKS--YRFFSQLEA 236
                            *******************************************866665..*******85 PP

2trihelix106.91.4e-33414499187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                            rW+k ev+aLi++r+ +++++ ++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+k+++k r +++s+tcpyf+ql+a
  GSMUA_Achr2P11910_001 414 RWPKTEVHALINLRSGLDSKYHEAGPKGPLWEEISAGMQRLGYNRSAKRCKEKWENINKYFKKVKDSNKHR-PDDSKTCPYFHQLDA 499
                            8********************************************************************86.9************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.11284129IPR017877Myb-like domain
CDDcd122035.53E-2090216No hitNo description
PfamPF138379.3E-10188237No hitNo description
PROSITE profilePS500907.433407471IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.9E-4410470IPR009057Homeodomain-like
CDDcd122034.87E-30413478No hitNo description
PfamPF138371.4E-22413500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MQQQGGSRYG VPPCEMTPFS PEPPASRAHL LGIPGPEPLQ DPPLAEAPSP LSSRPPAANF  60
DELAPGAAGG NFPEDDGEGG ERGGSGATGN RWPRQETLAL LQIRSDMDSA FRDATLKGPL  120
WEEVSRSLPL VSQCVILSLS YIIPFFRSQP ILIRQIISLD RCLRFPDAKS CIPRGRLIAF  180
NFLLSPSKLA ELGYKRSAKK CKEKFENVHK YYKRTKDGRA GRQDGKSYRF FSQLEALHGG  240
SSGGGGGATG MAGPPASRAQ PISAVAPSTL TSQEGRKRKR GGGDSGSSRK MMAFFDRLMK  300
QVMERQEAMQ QRFLDAIEKR EQDRMIRDEA WRRQEMTRLN REQELLAQER AMAASRDTAI  360
ISYLQKLSGQ TIPMPTMPAT PQQQQRPPAS LVLNTEPQDA EDGVNLEPMS SSSRWPKTEV  420
HALINLRSGL DSKYHEAGPK GPLWEEISAG MQRLGYNRSA KRCKEKWENI NKYFKKVKDS  480
NKHRPDDSKT CPYFHQLDAL YRNRLLGSGS NVGTQRQEGQ EVNPASNQQQ SGAPMNLSST  540
PPLHQPPAEA ESKNEKNCSN NSGCDGNSEG GGGSNAIQAQ TGNGGLPSSF FDEGLKKVSA  600
TPPLSLPTNL CIFAGDIITW WIDAALKTVR QHGQRRGGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194202KRSAKKCKE
2274280GRKRKRG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117421e-59AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence.
GenBankAP0048391e-59AP004839.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519A12.
GenBankAP0048681e-59AP004868.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0048B08.
GenBankAP0149581e-59AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-59CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389115.10.0PREDICTED: trihelix transcription factor GTL1 isoform X1
RefseqXP_009389116.10.0PREDICTED: trihelix transcription factor GTL1 isoform X2
SwissprotQ391177e-73TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLM0S7820.0M0S782_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P11910_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.19e-79Trihelix family protein