PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P11880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HSF | ||||||||
Protein Properties | Length: 520aa MW: 56913 Da PI: 8.3085 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.8 | 9.8e-35 | 37 | 127 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+y++++d++++++isw+e+g++fvv+ + efa++vLpk+Fkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F++g GSMUA_Achr2P11880_001 37 FLTKTYQLVDDPAMDDVISWNEDGSTFVVWRPAEFARDVLPKFFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRG 115 9*****************************************************************99.........*********** PP XXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkk 101 +k ll++i+r+k GSMUA_Achr2P11880_001 116 EKGLLCDIHRRK 127 **********98 PP | |||||||
2 | AP2 | 50.5 | 5.3e-16 | 379 | 429 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 + y+G+r+++ g+Wv+eIr+p+ + r++lg++ tae+Aa a++ a+ +l+g+ GSMUA_Achr2P11880_001 379 PSYRGIRYRS--GKWVSEIREPR----KaSRIWLGTYPTAEMAAVAYDVAASALRGA 429 57*****976..*********94....36*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.7E-37 | 30 | 121 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.4E-58 | 33 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.9E-35 | 34 | 126 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.6E-19 | 37 | 60 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.0E-31 | 37 | 126 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-19 | 75 | 87 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 76 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.6E-19 | 88 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
CDD | cd00018 | 9.30E-27 | 379 | 438 | No hit | No description |
Pfam | PF00847 | 7.9E-10 | 379 | 428 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 380 | 438 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.284 | 380 | 436 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-28 | 380 | 442 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 380 | 437 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MGHPAKTSQP TEGTEQEAPL HPPPPSYEGQ RVMPTPFLTK TYQLVDDPAM DDVISWNEDG 60 STFVVWRPAE FARDVLPKFF KHNNFSSFVR QLNTYGFRKI VPDRWEFAND CFRRGEKGLL 120 CDIHRRKFSP TPAPAVSAPP NLVPAPVTSG WAAPGTSGGT SDLAEENSRL RRENKQLSQE 180 LGQMKGMCNN IMQLIAKYAP GRQFGPAAAE GSSGGEGTTR IFGVSIGFKR NRREHGSAAS 240 RSLTLFNVLG CLLAIISLSS NSLNAFIASF SSPISPLCST HHRVCCPTTR TTHIKRHDHV 300 NHHGFGSLGL FCRSSFSFLV CFSSCRCMAD RGSDMHRDSH VGGRPMPLRP PPYDQGGGNA 360 AQRSETHTRT ERAASGKHPS YRGIRYRSGK WVSEIREPRK ASRIWLGTYP TAEMAAVAYD 420 VAASALRGAD AVLNFPDDIA SRPAPASPSP SHIRVAAAEA AAASQQQLGR YVDEEEIFDM 480 PQLLVNMAEG MLISPPRLSP QGCEEDSPEA SEGESLWSYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 1e-24 | 37 | 126 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 1e-24 | 37 | 126 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 1e-24 | 37 | 126 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 1e-24 | 37 | 126 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 1e-24 | 37 | 126 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU975220 | 3e-78 | EU975220.1 Zea mays clone 484753 heat shock factor protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0S779 | 0.0 | M0S779_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P11880_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 8e-64 | heat shock transcription factor B2A |