PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P11880_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family HSF
Protein Properties Length: 520aa    MW: 56913 Da    PI: 8.3085
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P11880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.8e-35371272101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d++++++isw+e+g++fvv+ + efa++vLpk+Fkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g
  GSMUA_Achr2P11880_001  37 FLTKTYQLVDDPAMDDVISWNEDGSTFVVWRPAEFARDVLPKFFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRG 115
                            9*****************************************************************99.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +k ll++i+r+k
  GSMUA_Achr2P11880_001 116 EKGLLCDIHRRK 127
                            **********98 PP

2AP250.55.3e-16379429156
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                            + y+G+r+++  g+Wv+eIr+p+    +  r++lg++ tae+Aa a++ a+ +l+g+
  GSMUA_Achr2P11880_001 379 PSYRGIRYRS--GKWVSEIREPR----KaSRIWLGTYPTAEMAAVAYDVAASALRGA 429
                            57*****976..*********94....36*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-3730121IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-5833126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.9E-3534126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-193760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.0E-3137126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-1988100IPR000232Heat shock factor (HSF)-type, DNA-binding
CDDcd000189.30E-27379438No hitNo description
PfamPF008477.9E-10379428IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18380438IPR016177DNA-binding domain
PROSITE profilePS5103220.284380436IPR001471AP2/ERF domain
SMARTSM003801.8E-28380442IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-26380437IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGHPAKTSQP TEGTEQEAPL HPPPPSYEGQ RVMPTPFLTK TYQLVDDPAM DDVISWNEDG  60
STFVVWRPAE FARDVLPKFF KHNNFSSFVR QLNTYGFRKI VPDRWEFAND CFRRGEKGLL  120
CDIHRRKFSP TPAPAVSAPP NLVPAPVTSG WAAPGTSGGT SDLAEENSRL RRENKQLSQE  180
LGQMKGMCNN IMQLIAKYAP GRQFGPAAAE GSSGGEGTTR IFGVSIGFKR NRREHGSAAS  240
RSLTLFNVLG CLLAIISLSS NSLNAFIASF SSPISPLCST HHRVCCPTTR TTHIKRHDHV  300
NHHGFGSLGL FCRSSFSFLV CFSSCRCMAD RGSDMHRDSH VGGRPMPLRP PPYDQGGGNA  360
AQRSETHTRT ERAASGKHPS YRGIRYRSGK WVSEIREPRK ASRIWLGTYP TAEMAAVAYD  420
VAASALRGAD AVLNFPDDIA SRPAPASPSP SHIRVAAAEA AAASQQQLGR YVDEEEIFDM  480
PQLLVNMAEG MLISPPRLSP QGCEEDSPEA SEGESLWSYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A1e-243712610110Heat shock factor protein 1
5hdn_A1e-243712610110Heat shock factor protein 1
5hdn_B1e-243712610110Heat shock factor protein 1
5hdn_C1e-243712610110Heat shock factor protein 1
5hdn_D1e-243712610110Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9752203e-78EU975220.1 Zea mays clone 484753 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0S7790.0M0S779_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P11880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.18e-64heat shock transcription factor B2A