PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P11450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 308aa    MW: 35164.1 Da    PI: 8.1243
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P11450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.2e-141571148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48
                           +g W+++Ed++l d + ++G g+W++++++ g         + R +k+c++rw +yl
  GSMUA_Achr2P11450_001 15 KGLWSPDEDQRLRDFILKHGHGCWSSVPARAGkrtgcfftcLQRNGKSCRLRWINYL 71
                           678****************************************************97 PP
2Myb_DNA-binding46.58.6e-1579141348
                            SS-HHHHHHHHHHHHHTTTT..................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGgg..................tWktIartmgkgRtlkqcksrwqkyl 48 
                             +T+eE+ +  +++++lG++                   W+ Ia +++ gRt++++k++w+++l
  GSMUA_Achr2P11450_001  79 DFTPEEEGIVMKLHTLLGNKychsysfvtvvfyirsiiKWSQIAMHLP-GRTDNEVKNHWNTHL 141
                            59**********************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.6151075IPR017930Myb domain
SMARTSM007176.8E-101473IPR001005SANT/Myb domain
SuperFamilySSF466893.15E-201575IPR009057Homeodomain-like
PfamPF002492.2E-121571IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-191677IPR009057Homeodomain-like
CDDcd001671.83E-91871No hitNo description
SMARTSM007172.0E-1076143IPR001005SANT/Myb domain
PROSITE profilePS5129413.52576145IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2278146IPR009057Homeodomain-like
PfamPF002494.1E-1179141IPR001005SANT/Myb domain
CDDcd001678.75E-880141No hitNo description
SuperFamilySSF466893.15E-20113142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGCKACEKPK VSYKKGLWSP DEDQRLRDFI LKHGHGCWSS VPARAGKRTG CFFTCLQRNG  60
KSCRLRWINY LRPGLKHSDF TPEEEGIVMK LHTLLGNKYC HSYSFVTVVF YIRSIIKWSQ  120
IAMHLPGRTD NEVKNHWNTH LKKKLVKIEG SSSHASMTKS LESDSQCPKL EKLIDENSNQ  180
ISLSESSDSL KSVSPTPCRS IHVTNHAPFP KILFADWLPM FRGNDQSSSA PESDRVNWQQ  240
ESTLNSEVLS PKLMQFDTIF TEVFLHGFED ASICGGFKLQ FEPVEQIFGF HDQAYTGLEL  300
NHDMFVNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-20151457108B-MYB
1h8a_C1e-191514527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389781.20.0PREDICTED: transcription factor MYB23-like
TrEMBLM0S7360.0M0S736_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P11450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP170737109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.12e-46myb domain protein 26