PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P10690_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | TCP | ||||||||
Protein Properties | Length: 211aa MW: 22514.8 Da PI: 6.3394 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 78 | 2.7e-24 | 1 | 50 | 24 | 73 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++ GSMUA_Achr2P10690_001 1 MPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTIPASFS 50 9********************************************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-19 | 1 | 55 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 20.861 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MPIICAARVF QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GSGTIPASFS TTSPSYDRFI 60 AAGGGATIGI GPATGFWALP ARADFGQVWS FAAPEMVASQ HAAFTGTFAG QPMGEASAAR 120 VGNYLPLAGH LNLLASLSGP PDVRVQINSS CSSCILSSYL LYSLDRYICN LLSMRNLILL 180 YAFFGEFLVE HYAAELVVEQ LAESKPKSIL H |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK240798 | 3e-51 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. | |||
GenBank | AP004776 | 3e-51 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. | |||
GenBank | AP014958 | 3e-51 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 3e-51 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389224.1 | 3e-81 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 3e-45 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | M0S6W0 | 1e-153 | M0S6W0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P10690_001 | 1e-153 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-44 | TCP family protein |