PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P10090_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

FAR1

Protein Properties

Length: 608aa MW: 69237.7 Da PI: 8.6055

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P10090_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.1	6.4e-28	58	146	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY++YA+++GF+ r+s+ +skr+++i++r++vCs+eg+r++++++ + +++r+r tr+gC+a+++vkk+++gkw+vtk+e+ HnH GSMUA_Achr2P10090_001 58 FYHTYASQMGFKARVSSFIRSKRDKTIISRQLVCSREGFRSTKDTNgEGRTKRPRIITRVGCRAMIMVKKQSSGKWVVTKCEKIHNHV 145 9***************************************99997788999********************************8 PP FAR1 89 l 89 l GSMUA_Achr2P10090_001 146 L 146 7 PP
2	FAR1	98.9	5.5e-31	215	305	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY+eYAk++GF+ r+s+ ++skr+++i++r +vCskeg+r++++++ +e+ +r+ra+tr+gCka+++vkk+++gkw v+kl+++HnHe GSMUA_Achr2P10090_001 215 FYKEYAKRAGFRARISSYYRSKRDNSIISRLLVCSKEGFRAKKDENaEERLQRPRAVTRIGCKAMIMVKKRDSGKWTVSKLVKHHNHE 302 9**************************************9999956667889******************************** PP FAR1 89 lap 91 l p GSMUA_Achr2P10090_001 303 LIP 305 975 PP
3	FAR1	89.3	5.3e-28	354	442	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +Y++++GF++r+s+ ++skr+++i++r fvCskeg+ +++ ++k +r+r+ tr+gCka+l+vkk+++gkw+v+k+e++HnH+ GSMUA_Achr2P10090_001 354 FYIAYSRHIGFNMRVSTYYRSKRDKSIISRLFVCSKEGFYVKKDMGgESKIKRPREATRVGCKAMLMVKKNNSGKWVVSKFEKDHNHP 441 9************************************99988876788899********************************9 PP FAR1 89 l 89 l GSMUA_Achr2P10090_001 442 L 442 9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-25	58	146	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.0E-29	215	305	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.2E-25	354	442	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 608 aa Download sequence Send to blast
MEGFMFSSPM IISPVDVEPR IADVDEMIES SVGRELFEPI LEPYEGMEFE SEEAARAFYH 60 TYASQMGFKA RVSSFIRSKR DKTIISRQLV CSREGFRSTK DTNGEGRTKR PRIITRVGCR 120 AMIMVKKQSS GKWVVTKCEK IHNHVLGTQG KVVMLDYDPY LHEDEEVIEN PVGNETSMNS 180 GAISDEMVVL PPEGEPGLEP HEGMEFESEH EAQIFYKEYA KRAGFRARIS SYYRSKRDNS 240 IISRLLVCSK EGFRAKKDEN AEERLQRPRA VTRIGCKAMI MVKKRDSGKW TVSKLVKHHN 300 HELIPRSASD DECSAEEDDE LVEMERAFVL HEGDAITEPY EGMEFESEDD AKIFYIAYSR 360 HIGFNMRVST YYRSKRDKSI ISRLFVCSKE GFYVKKDMGG ESKIKRPREA TRVGCKAMLM 420 VKKNNSGKWV VSKFEKDHNH PLGSLSKIRK ESPTTRYNNL CREAMKYAEV GAASPDVYSV 480 AMHALREAVE KVTAIKRKAG GVADLGPVVG KCSIENRNKQ DSQIEPSTHL NQQSRTRSHP 540 SESRSKSSYD RPPRKMRICN SGKQPRDHIG RSCPSKQVQL QQIDIVPHES VNMLFDEPVN 600 ELIQKGDG

Sequence ? help Back to Top

Protein Sequence Length: 608 aa Download sequence Send to blast

MEGFMFSSPM IISPVDVEPR IADVDEMIES SVGRELFEPI LEPYEGMEFE SEEAARAFYH  60
TYASQMGFKA RVSSFIRSKR DKTIISRQLV CSREGFRSTK DTNGEGRTKR PRIITRVGCR  120
AMIMVKKQSS GKWVVTKCEK IHNHVLGTQG KVVMLDYDPY LHEDEEVIEN PVGNETSMNS  180
GAISDEMVVL PPEGEPGLEP HEGMEFESEH EAQIFYKEYA KRAGFRARIS SYYRSKRDNS  240
IISRLLVCSK EGFRAKKDEN AEERLQRPRA VTRIGCKAMI MVKKRDSGKW TVSKLVKHHN  300
HELIPRSASD DECSAEEDDE LVEMERAFVL HEGDAITEPY EGMEFESEDD AKIFYIAYSR  360
HIGFNMRVST YYRSKRDKSI ISRLFVCSKE GFYVKKDMGG ESKIKRPREA TRVGCKAMLM  420
VKKNNSGKWV VSKFEKDHNH PLGSLSKIRK ESPTTRYNNL CREAMKYAEV GAASPDVYSV  480
AMHALREAVE KVTAIKRKAG GVADLGPVVG KCSIENRNKQ DSQIEPSTHL NQQSRTRSHP  540
SESRSKSSYD RPPRKMRICN SGKQPRDHIG RSCPSKQVQL QQIDIVPHES VNMLFDEPVN  600
ELIQKGDG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389292.1	0.0	PREDICTED: uncharacterized protein LOC103975894 isoform X1
Refseq	XP_009389293.1	0.0	PREDICTED: uncharacterized protein LOC103975894 isoform X1
TrEMBL	M0S6Q0	0.0	M0S6Q0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P10090_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	2e-43	FAR1-related sequence 12