PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P09710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 466aa    MW: 51597 Da    PI: 5.8293
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P09710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY33.49.2e-11156181227
                            --SS-EEEEEEE--TT-SS-EEEEEE CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrC 27 
                            +D ++WrKYGqK++kgs++pr+   C
  GSMUA_Achr2P09710_001 156 SDLWAWRKYGQKPIKGSPYPRNHSLC 181
                            699******************97666 PP
2WRKY50.73.5e-161962362059
                            S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  20 fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            + ++YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  GSMUA_Achr2P09710_001 196 NMKGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 236
                            5689*****998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.495150238IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-27152238IPR003657WRKY domain
SuperFamilySSF1182902.48E-8153183IPR003657WRKY domain
SMARTSM007745.5E-33155237IPR003657WRKY domain
PfamPF031068.8E-6157178IPR003657WRKY domain
PfamPF031064.0E-13196236IPR003657WRKY domain
SuperFamilySSF1182904.45E-13196238IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MENDRGDLAD IVRAAGSRSG PPHANFDPVV SRCHLPSQPV VFPERTEAPT NNSGEYLLNL  60
RDPLPDQYTG VEFFYGAEAM VAPAKTDTDS SSMMMMKLMN VSSSSAAGPV DHGGGVQILC  120
PQTPGVKRRK SQAKKVVCIP APAAATSRPT GEVVPSDLWA WRKYGQKPIK GSPYPRNHSL  180
CISFSLVLLS QFRMRNMKGY YRCSSSKGCS ARKQVERSRT DPNMLVITYT SEHNHPWPTQ  240
RNALAGSTRS HPFKNALKIP GDDVLKSPTA PKEERREATT SNAHLDLEQE QEEEEMDKPT  300
EDDDFNQNMH RSYKPMIPEA DQPDDFFADL AELETDPMSL IFSKGYMDAK PDEERGHKAS  360
DTMDMFDWAE TLVVIILQSP KLCSRSNELC GFTKLTTAGS FSCLTEQQPW MRVSKSRGGS  420
EVGAVPHQFG ILEDGTESCG TEAFNSSQVR ASDVTEEAMA RMLRTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B8e-21131239380Disease resistance protein RRS1
5w3x_D8e-21131239380Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389339.11e-178PREDICTED: probable WRKY transcription factor 14
TrEMBLM0S6L20.0M0S6L2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P09710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.17e-66WRKY DNA-binding protein 14