PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr2P09110_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 119aa MW: 13061.7 Da PI: 9.1045 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.6 | 2.4e-37 | 45 | 101 | 2 | 58 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrkn 58 +e+al+cprC+s++tkfCy+nny+++qPr+fCkaC+ryWt+GGalrnvPvG+grr+ GSMUA_Achr2P09110_001 45 PEEALPCPRCKSKKTKFCYFNNYNVNQPRHFCKACHRYWTAGGALRNVPVGAGRRRG 101 78999**************************************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.2E-30 | 47 | 100 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 1.0E-23 | 49 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.848 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 119 aa Download sequence Send to blast |
MAEDEEAPSF KLFGTVILKG DGLGKEEEAA QPATETAGVV EAVEPEEALP CPRCKSKKTK 60 FCYFNNYNVN QPRHFCKACH RYWTAGGALR NVPVGAGRRR GCPTNRRSTW TGRRQGGGS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Transcriptional repressor of 'CONSTANS' expression (By similarity). Regulates a photoperiodic flowering response. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. The transcript level rises progressively from dawn and decreases during the night. {ECO:0000269|PubMed:19619493}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK071083 | 6e-42 | AK071083.1 Oryza sativa Japonica Group cDNA clone:J023076F14, full insert sequence. | |||
GenBank | AP003409 | 6e-42 | AP003409.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1131G08. | |||
GenBank | AP014957 | 6e-42 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 6e-42 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | HQ858825 | 6e-42 | HQ858825.1 Oryza sativa Japonica Group isolate UT1323 C2C2-Dof transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009392426.2 | 3e-45 | PREDICTED: dof zinc finger protein DOF1.5 | ||||
Swissprot | O22967 | 3e-35 | CDF4_ARATH; Cyclic dof factor 4 | ||||
TrEMBL | M0S6F2 | 8e-83 | M0S6F2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P09110_001 | 1e-83 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6495 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34140.1 | 8e-33 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|