PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P09080_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 30578 Da PI: 10.0539 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.1 | 7.8e-32 | 39 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpk......................kvkaee 55 lp+G++F+Ptd+el+ ++L+ k+++++ + + +i+ +i++++P++Lp +v+++ GSMUA_Achr2P09080_001 39 LPAGVKFDPTDQELL-QHLEGKARSDPqrlhplI---DdfipTIEGEdGICYTHPEKLPVtwsalslslslslslmrckkrsCVRSDG 122 799************.99*******996665442...133334666646**********5599********99999876655444455 PP NAM 56 kewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +fF++ +++y+tg+rk+r+++ + +W++tgk+++v++ +g l+g kk+Lv+y g+++k+ekt+W+mh+y+l GSMUA_Achr2P09080_001 123 LVRHFFHRPSRAYTTGTRKRRKVHtdvhgsETRWHKTGKTRPVFA-GGDLKGYKKILVLYtnYGKQRKPEKTNWIMHQYHL 202 577******************744446555788************.99************6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-32 | 31 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.409 | 39 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.3E-15 | 40 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MVSISKKSHE NTIRTCPSCG YPIQYQRQVA PSMQDFLGLP AGVKFDPTDQ ELLQHLEGKA 60 RSDPQRLHPL IDDFIPTIEG EDGICYTHPE KLPVTWSALS LSLSLSLSLM RCKKRSCVRS 120 DGLVRHFFHR PSRAYTTGTR KRRKVHTDVH GSETRWHKTG KTRPVFAGGD LKGYKKILVL 180 YTNYGKQRKP EKTNWIMHQY HLGFDEEEKD GELVVSKIFF QTQPRQCGSA LKDTFQTKLK 240 GGQDRVSSPH LFPSFPTMHA TGAPPPFLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389409.1 | 1e-171 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-102 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | M0S6E9 | 0.0 | M0S6E9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P09080_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-103 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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