PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P09080_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 269aa    MW: 30578 Da    PI: 10.0539
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P09080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.17.8e-32392021128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpk......................kvkaee 55 
                            lp+G++F+Ptd+el+ ++L+ k+++++      +   +    +i+   +i++++P++Lp                       +v+++ 
  GSMUA_Achr2P09080_001  39 LPAGVKFDPTDQELL-QHLEGKARSDPqrlhplI---DdfipTIEGEdGICYTHPEKLPVtwsalslslslslslmrckkrsCVRSDG 122
                            799************.99*******996665442...133334666646**********5599********99999876655444455 PP

                    NAM  56 kewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               +fF++ +++y+tg+rk+r+++      + +W++tgk+++v++ +g l+g kk+Lv+y   g+++k+ekt+W+mh+y+l
  GSMUA_Achr2P09080_001 123 LVRHFFHRPSRAYTTGTRKRRKVHtdvhgsETRWHKTGKTRPVFA-GGDLKGYKKILVLYtnYGKQRKPEKTNWIMHQYHL 202
                            577******************744446555788************.99************6657999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3231221IPR003441NAC domain
PROSITE profilePS5100529.40939221IPR003441NAC domain
PfamPF023658.3E-1540202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVSISKKSHE NTIRTCPSCG YPIQYQRQVA PSMQDFLGLP AGVKFDPTDQ ELLQHLEGKA  60
RSDPQRLHPL IDDFIPTIEG EDGICYTHPE KLPVTWSALS LSLSLSLSLM RCKKRSCVRS  120
DGLVRHFFHR PSRAYTTGTR KRRKVHTDVH GSETRWHKTG KTRPVFAGGD LKGYKKILVL  180
YTNYGKQRKP EKTNWIMHQY HLGFDEEEKD GELVVSKIFF QTQPRQCGSA LKDTFQTKLK  240
GGQDRVSSPH LFPSFPTMHA TGAPPPFLS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389409.11e-171PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-102NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM0S6E90.0M0S6E9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P09080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-103NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]