PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P08990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 93aa    MW: 10511.9 Da    PI: 9.1351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P08990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09955347
                           SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                           +WT+   + +  a  ++ ++   +W+++ar +g g+++ ++k ++q +
  GSMUA_Achr2P08990_001  9 AWTPKQNKVFEMALVEYDKDtpdRWHKVARAVG-GKSEQEVKRHYQLL 55
                           8********************************.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-6658IPR001005SANT/Myb domain
PROSITE profilePS500906.202856IPR017877Myb-like domain
SuperFamilySSF466895.93E-13863IPR009057Homeodomain-like
PfamPF002499.9E-7954IPR001005SANT/Myb domain
CDDcd001671.51E-6956No hitNo description
Gene3DG3DSA:1.10.10.608.5E-42556IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MASCSLSSAW TPKQNKVFEM ALVEYDKDTP DRWHKVARAV GGKSEQEVKR HYQLLVEDLL  60
RIETGQMPRA NYHSAGNRGT LPSHLPFPTP AFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-24176177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389415.11e-54PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1732e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0S6E02e-64M0S6E0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P08990_0013e-65(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-32RAD-like 6