PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P08910_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 385aa MW: 42049.4 Da PI: 8.5072

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P08910_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.6	2.2e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H GSMUA_Achr2P08910_001 83 FICEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	12.7	0.00039	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ GSMUA_Achr2P08910_001 160 WKCDKCSKRYAVHSDWKAHVKTC 182 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.6E-6	82	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.7E-7	82	105	No hit	No description
PROSITE profile	PS50157	10.845	83	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.022	83	105	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	4.4E-5	83	105	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	85	105	IPR007087	Zinc finger, C2H2
SMART	SM00355	120	125	155	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.1E-4	148	181	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.7E-7	155	180	No hit	No description
SMART	SM00355	90	160	180	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MFLSSSAAAA ASNSTSISEE ASVSSETRFH VGFSSSLAPS SPHHQPQQPP PKTRKKRSQP 60 GNPDPDAEVV ALSPNTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSKEVA 120 RKRVYVCPEP SCVHHHPSRA LGDLTGIKKH FSRKHGEKRW KCDKCSKRYA VHSDWKAHVK 180 TCGTKEYRCD CGTLFSRKDS FITHRAFCDA LAEESARLMS AAVTTSPPLH QPLFLPFSSW 240 HPTTSSNPNL ILNPSHDPDI GALQIKPAEN DLPSLVHHLP TGTSTSAHLS ATALLQRAST 300 MGAMSFTNTV SGQGYDGMMV GDVAAFPMWQ NGHRLTRDFL GVAAGEAGDE DDDLLLDLVA 360 ASSCAPMGDP TKQLSGFPPV TGPWD

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MFLSSSAAAA ASNSTSISEE ASVSSETRFH VGFSSSLAPS SPHHQPQQPP PKTRKKRSQP  60
GNPDPDAEVV ALSPNTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LRQRSSKEVA  120
RKRVYVCPEP SCVHHHPSRA LGDLTGIKKH FSRKHGEKRW KCDKCSKRYA VHSDWKAHVK  180
TCGTKEYRCD CGTLFSRKDS FITHRAFCDA LAEESARLMS AAVTTSPPLH QPLFLPFSSW  240
HPTTSSNPNL ILNPSHDPDI GALQIKPAEN DLPSLVHHLP TGTSTSAHLS ATALLQRAST  300
MGAMSFTNTV SGQGYDGMMV GDVAAFPMWQ NGHRLTRDFL GVAAGEAGDE DDDLLLDLVA  360
ASSCAPMGDP TKQLSGFPPV TGPWD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-35	156	220	3	67	Zinc finger protein JACKDAW
5b3h_F	7e-35	156	220	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389837.2	0.0	PREDICTED: protein indeterminate-domain 12-like
Swissprot	O22759	1e-114	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	M0S6D2	0.0	M0S6D2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P08910_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-108	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]