PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P07930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 381aa    MW: 42540.7 Da    PI: 8.1224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P07930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.8e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr2P07930_001 14 KGLWSPEEDEKLIRHITKYGHGCWSSVPKQAGLERCGKSCRLRWINYL 61
                           678*******************************************97 PP
2Myb_DNA-binding482.8e-1567110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg ++++E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++
  GSMUA_Achr2P07930_001  67 RGTFSKQEESLIIELHAVLGNR-WSQIASRLP-GRTDNEIKNFWNS 110
                            899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.7E-28564IPR009057Homeodomain-like
PROSITE profilePS5129425.342965IPR017930Myb domain
SuperFamilySSF466893.11E-2912108IPR009057Homeodomain-like
SMARTSM007175.9E-141363IPR001005SANT/Myb domain
PfamPF002492.4E-151461IPR001005SANT/Myb domain
CDDcd001674.94E-121761No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129420.10566116IPR017930Myb domain
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PfamPF002493.4E-1467110IPR001005SANT/Myb domain
CDDcd001671.12E-1069109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MGRQSCCYKQ KLRKGLWSPE EDEKLIRHIT KYGHGCWSSV PKQAGLERCG KSCRLRWINY  60
LRPDLKRGTF SKQEESLIIE LHAVLGNRWS QIASRLPGRT DNEIKNFWNS CVKKKLRQSG  120
IDPNTHKPLA EMEDKTSNSG DLKAPATTLE KTKHSVHKPA SSSSSSGESR TWKNSVTPTR  180
GFFHDHESSS ACHLSPLPHS GFAPDCAPLF EMNQELNCST ISTVLLSVPS GNISALMSLK  240
PNIDLFRDEI DGIQCSSDVY LSNSRRSSMN TGSVIELQSS TSFDGGILPF SELTPEKNAH  300
VQLEREHEDL KWSEYLQGTI TASATIQSQS HPLQYDIKTE SQSVLVGLGT WQQNQQGQQQ  360
LQSSNIYGKD FHMVSVGFGQ V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389527.10.0PREDICTED: transcription factor MYB34
TrEMBLM0S6340.0M0S634_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P07930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23103794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-88myb domain protein 61