PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P07300_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 36570.5 Da PI: 4.5308 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.9 | 2.6e-18 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp + r++lg+f +aeeAa+a++a +++++g GSMUA_Achr2P07300_001 110 QFRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFNSAEEAARAYDAEARRIRG 159 69*******.**********72....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 110 | 168 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-35 | 110 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 110 | 167 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.97E-30 | 110 | 167 | No hit | No description |
SuperFamily | SSF54171 | 3.14E-21 | 110 | 168 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-10 | 111 | 122 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-11 | 111 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MCGGAIISEF IPAAASRRVT AENPWPGGRK RWGKQRRVEA EDDFEADFQE FDDESSEDEF 60 DDEEEIDEVG VKCFGFGSKP CFSRERSTTL KSGDFSGSEV QSAKRKRKNQ FRGIRQRPWG 120 KWAAEIRDPH KGVRVWLGTF NSAEEAARAY DAEARRIRGK KAKVNFPRAA SSGSKKIIPK 180 PTALRTHVPN PHLEEELAKP VYLNTLPTKE PSAPGEGMEF HSDEGSNSCG DPDFGLLSVQ 240 VPTADNGLLS LKNLKDNCGV QVSEEETTPV DLSEDLSAFD PYANFMQFPY LEGSSDLSID 300 SLFGGELAQG DLADVNLWSF DELPMEGSLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-20 | 110 | 173 | 5 | 69 | ATERF1 |
3gcc_A | 4e-20 | 110 | 173 | 5 | 69 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 27 | 34 | GRKRWGKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389584.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | M0S5X1 | 0.0 | M0S5X1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P07300_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 3e-31 | related to AP2 12 |