PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P06150_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | SBP | ||||||||
Protein Properties | Length: 393aa MW: 42562.5 Da PI: 6.9515 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.5 | 7.1e-42 | 86 | 162 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls+++eyhrrhkvCe+hsk+p v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+ GSMUA_Achr2P06150_001 86 CSVDGCNSDLSNCREYHRRHKVCEIHSKTPIVMVGGVEQRFCQQCSRFHLLIEFDEVKRSCRKRLDGHNRRRRKPQP 162 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-33 | 79 | 147 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.206 | 83 | 160 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.03E-40 | 85 | 164 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.0E-30 | 86 | 159 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MEWDYKMPPW DLAELEQSAE PSMGAVVGPS CNLRSQAEGA DCSVDLKLGG SPEKWKSQSK 60 TTTAVSSSSP SKRARAPGAG SQNAACSVDG CNSDLSNCRE YHRRHKVCEI HSKTPIVMVG 120 GVEQRFCQQC SRFHLLIEFD EVKRSCRKRL DGHNRRRRKP QPESATSANL FPIQQGTRFS 180 TCAYISQAPL TEPNWSAIVK AEKDALYTHH TPLHLIDSQH HFPGSFSCSY KERKQFPFLQ 240 DGKAAFSRTA VEASICQPLL NTVPSVESSS SSSSSKLFSD GLTQAINSEC ALSLLSSPTQ 300 TSSISVDHML PTNRIPVGQP LVPSLQYSSL NPYSGSPASG SVLPTEFSCS GAEDEQAGGV 360 LVSDTDLHCQ GMFQIGGEGA NDGASPSLHF SWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-28 | 86 | 159 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 159 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009386067.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 9e-93 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | M0S5K6 | 0.0 | M0S5K6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P06150_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-49 | SBP family protein |