PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 320aa    MW: 35764.1 Da    PI: 8.1061
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.6e-52131381129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            +ppGfrFhPtdeel+ +yLkkkv+ +k+el ev++evd++k+ePwdL+ +   + +ewyfFs++d+ky+tg+r+nrat +g+Wkatg+
  GSMUA_Achr2P05640_001  13 VPPGFRFHPTDEELLLYYLKKKVSLEKFEL-EVVREVDLNKIEPWDLQGT-CDRCNEWYFFSHKDRKYPTGSRTNRATGAGFWKATGR 98 
                            69***************************9.99**************944.35678******************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dk + + + +++g++ktLvfy+grap+g+k+dW+mheyrle
  GSMUA_Achr2P05640_001  99 DKCIRN-SYKKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE 138
                            *****9.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-587162IPR003441NAC domain
PROSITE profilePS5100556.95613162IPR003441NAC domain
PfamPF023651.2E-2714137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MASASSSSAS TGVPPGFRFH PTDEELLLYY LKKKVSLEKF ELEVVREVDL NKIEPWDLQG  60
TCDRCNEWYF FSHKDRKYPT GSRTNRATGA GFWKATGRDK CIRNSYKKIG MRKTLVFYRG  120
RAPHGQKSDW IMHEYRLEDS DDAIDSAAGC EEGWVVCRVF KKKCFFKVGG DGSSGQAMEN  180
HVNVGVSRQQ PRALSSQYVH PNLTHHYHHF HHHNPNLYHS HMPANAYSHG QVQDLLTNHR  240
PSGYDFAVLP GDAAAVVKPY DGGLELAAGP CEVMKDPGSS HWAVLEGMDG RLGGAAATAQ  300
QMNPMASQRG GEMDLWGYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-481316317166NO APICAL MERISTEM PROTEIN
1ut4_B3e-481316317166NO APICAL MERISTEM PROTEIN
1ut7_A3e-481316317166NO APICAL MERISTEM PROTEIN
1ut7_B3e-481316317166NO APICAL MERISTEM PROTEIN
4dul_A3e-481316317166NAC domain-containing protein 19
4dul_B3e-481316317166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385643.10.0PREDICTED: protein BEARSKIN1-like
SwissprotQ9SV878e-94BRN2_ARATH; Protein BEARSKIN2
TrEMBLM0S5F50.0M0S5F5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P05640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.11e-72NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]