PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05130_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 644aa    MW: 70412.4 Da    PI: 5.4056
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05130_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like60.43.6e-19203246145
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                            kpr++Wt eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+
  GSMUA_Achr2P05130_001 203 KPRVVWTVELHRKFVIAVNQL-GIDKAVPKKILDLMNVEKLTREN 246
                            79*******************.********************987 PP
2Response_reg81.23.4e-27191271109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl vdD+pl ++ll+ +l++ +y +v+++d++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++ge +++
  GSMUA_Achr2P05130_001  19 VLAVDDDPLCLKLLEALLRRCQY-NVTTTDKAITALNLLRENKdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGETQTV 104
                            799********************.***************888888*******************87754.558*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + +  Ga d+l Kp+ +eel++
  GSMUA_Achr2P05130_001 105 MKGIAHGACDYLLKPVRIEELRN 127
                            *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.6E-1621643IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23004.3E-4216140No hitNo description
SuperFamilySSF521726.12E-3716141IPR011006CheY-like superfamily
SMARTSM004482.1E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.88618133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.67E-2320133No hitNo description
Gene3DG3DSA:1.10.10.603.8E-20200254IPR009057Homeodomain-like
SuperFamilySSF466892.33E-12201254IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-16203246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MTVEERKGNA DQFPAGMRVL AVDDDPLCLK LLEALLRRCQ YNVTTTDKAI TALNLLRENK  60
DKFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSGNGE TQTVMKGIAH GACDYLLKPV  120
RIEELRNIWQ HVIRRRKFER RCHNDLDSRE DGQKAQIVKS EDGQGAADCY EKANKKRKDQ  180
IEDDEDDSDD NMQENEDPSS QKKPRVVWTV ELHRKFVIAV NQLGIDKAVP KKILDLMNVE  240
KLTRENKYRL YLKRLSAVAG QQASMAAAIG GRNSSYLHMA SLNGLRNYYA TGGSSQLPTL  300
GSFQPNGVLG RMGSPSALGM HGLLPSQTGQ LGSVPSSTSN PYNDLGKIQG TTSPGNSQMN  360
LLQGGLAAGP STGSFPNVSN NPLLLQPNKQ HDRSGGLGNY SSFRMSPSSS DFDIDLQDIS  420
QFPRISRYND SWQGAVVSSR DSANAVPILA SSTTKMLDES PNIVAVAPLS DPTISNNIQN  480
QVCSLSGSTI AMPAGFNNDP KLSKFNITGN SRQKWDYIFN SNEISSTSSN PSLPNLRITD  540
ATAQCQASEN VFINKKLDVD AIGQVHFGAP LVTQACMIDK LISDSPQNFR GEYAMATTSL  600
QTGLNSTGCS LDDVVNAMVK PEHDDIAFLD MDMGCEIYPL GTCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-20199256164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2261962e-48AC226196.1 Musa acuminata clone BAC MA4-125A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385043.10.0PREDICTED: two-component response regulator ORR24-like
SwissprotA2X1N21e-171ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8051e-171ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLM0S5A40.0M0S5A4_MUSAM; Two-component response regulator
STRINGGSMUA_Achr2P05130_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-101response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]