PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P04960_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

CO-like

Protein Properties

Length: 269aa MW: 28637.4 Da PI: 7.5018

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P04960_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.4	6e-08	17	61	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +++ ++ C+ + lC+ C +H+ H++ p+ GSMUA_Achr2P04960_001 17 WICEACKQAPAAVICKADAAALCDACDADIHSAnplacrHKRAPI 61 79*****************************66899999998775 PP
2	CCT	70.9	3.2e-24	194	237	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a GSMUA_Achr2P04960_001 194 REARVMRYREKRKNRRFEKTIRYASRKANAETRPRIKGRFAKRA 237 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	5.5E-11	14	61	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.224	14	61	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.2E-6	17	61	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.757	194	236	IPR010402	CCT domain
Pfam	PF06203	3.3E-18	194	236	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MRVHGAEQLA SRHKHVWICE ACKQAPAAVI CKADAAALCD ACDADIHSAN PLACRHKRAP 60 IAAPIKPSTA SAAFAFGAGA GDGVDEKEEN DAEEATAASW ILPNSGHAQF KGLIEAPLLK 120 SMEYYSSVGS YLDLDGAPPI SSFLPPDAGA ELDFVPTKPC HTIHSMSQSM PPSEVGVVPD 180 ESGGAGNAAA QMDREARVMR YREKRKNRRF EKTIRYASRK ANAETRPRIK GRFAKRASIE 240 AEVDRIYSSA SAAPAALMAD AGFGVVPSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK243265	9e-40	AK243265.1 Oryza sativa Japonica Group cDNA, clone: J100049E07, full insert sequence.
GenBank	AP003579	9e-40	AP003579.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0709F06.
GenBank	AP014962	9e-40	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	9e-40	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CT837522	9e-40	CT837522.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI009P15, full insert sequence.
GenBank	CU406613	9e-40	CU406613.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109H06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418181.1	1e-101	PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
Swissprot	Q9FHH8	6e-54	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	M0S587	0.0	M0S587_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P04960_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	5e-42	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]