PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P04730_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 317aa MW: 35234.6 Da PI: 7.2836

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P04730_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	65.8	7.8e-21	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+d+v+++G g+W++I++ g++R++k+c++rw +yl GSMUA_Achr2P04730_001 15 KGPWTPEEDRKLIDYVQKHGRGRWHRIPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	60	5.3e-19	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr2P04730_001 68 RGKFTEEEEQLIVHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.463	10	62	IPR017930	Myb domain
SuperFamily	SSF46689	9.73E-33	13	109	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-18	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	3.3E-19	15	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-27	16	69	IPR009057	Homeodomain-like
CDD	cd00167	3.72E-14	17	62	No hit	No description
PROSITE profile	PS51294	29.487	63	117	IPR017930	Myb domain
SMART	SM00717	1.7E-17	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-17	68	113	IPR001005	SANT/Myb domain
CDD	cd00167	1.28E-12	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-27	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MARSLSHEEM GSVKKGPWTP EEDRKLIDYV QKHGRGRWHR IPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FTEEEEQLIV HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLMRM 120 GIDPVTHRPT TDLSLLTSLS SLLSAGNLGY TTSHLETALK LQAEAALLVQ SLIQALTSSS 180 TSNMDLMNLF GSPSHTNYKA GDGCLGGSFN LQNSASVIPY WNKDSQPVPD SSFCMDEGGV 240 TVWSASRTEE RQSASSSPAS NSTPLFASAS SEAENVDLLK LSDSTYANSL SFTPFEAWEN 300 LNLDSLISDL GWKEIQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-32	15	117	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384642.2	0.0	PREDICTED: transcription repressor MYB6-like
Swissprot	Q9S9Z2	7e-76	MYB93_ARATH; Transcription factor MYB93
TrEMBL	M0S564	0.0	M0S564_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P04730_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP79	38	563

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	3e-74	myb domain protein 9

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]