PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P04590_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | BES1 | ||||||||
Protein Properties | Length: 575aa MW: 64506.9 Da PI: 4.9059 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 54.7 | 4.2e-17 | 1 | 105 | 47 | 134 |
DUF822 47 nneVlkALcreAGwvvedDGttyr.....kgskpl....eeaeaagssasaspesslq.sslkssalaspvesysaspksssfpspss 124 +n+Vl+AL+reAGw+ve+DGtt+r ++s p + + + +s s+l+ +slk++++++ ++s++a ++ ++++sp+s GSMUA_Achr2P04590_001 1 MNDVLAALAREAGWIVEPDGTTFRpspapASSIPAapppPPPTQLAPFPIRSSDSPLSaTSLKNCSIKASLDSQAALLRIDESLSPTS 88 7***********************5555522222233345666777777899999999999*************************** PP DUF822 125 ldsislasa.......a 134 +dsi +a+ a GSMUA_Achr2P04590_001 89 FDSIVVAERdiksekyA 105 ****9998755544443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.4E-17 | 1 | 111 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 7.73E-154 | 134 | 568 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 6.4E-166 | 135 | 569 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 3.3E-82 | 157 | 531 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 172 | 186 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 193 | 211 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 215 | 236 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 308 | 330 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 381 | 400 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 415 | 431 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 432 | 443 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 450 | 473 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 5.3E-55 | 488 | 510 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MNDVLAALAR EAGWIVEPDG TTFRPSPAPA SSIPAAPPPP PPTQLAPFPI RSSDSPLSAT 60 SLKNCSIKAS LDSQAALLRI DESLSPTSFD SIVVAERDIK SEKYANASPI NSPDCVGHDQ 120 LMRESTDHKA NYVGTSYVPV YAALTSGIIN SYCQLVNPEA VRQELRHLKS LSVDGVVVDC 180 WWGIVEGWSP CKYNWSGYRE LFTILQEFEL KLQVVMAFHE NGGNGSGDMP ISLPKWVLEI 240 GKDNQDIFFT DREGRRNMEC LSWGIDKERV LKGRTGIEVC YDFMRSFRTE FGDLFEEGLI 300 SAIEIGLGAS GELKYPSFPE RMGWRYPGIG EFQCYDKYMQ KNLRLAAQSR GHLFWARGPD 360 NAGHYNLRPD ETGFFCDKGD YDSYYGRFFL HWYAQTLIDH ADQILSLTNL ALEGTEIIAK 420 IPAIYWWYRT ASHAAELTAG FHNPTNQDGY ASIFNMLKKH SVTIKFMCCG PQASMQENEE 480 ALADAEALSW QVLNTAWESG LRVAAQSTLP CDVRETYTKI LEIAKPRNDP DRHLLSFFTF 540 QQQLSPIIIQ REMFLSDLDN FIKCMHGEAG NDVQG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1v3i_A | 1e-121 | 136 | 568 | 10 | 444 | Beta-amylase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00543 | DAP | Transfer from AT5G45300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384530.1 | 0.0 | PREDICTED: beta-amylase 8 | ||||
Swissprot | Q9FH80 | 0.0 | BAM8_ARATH; Beta-amylase 8 | ||||
TrEMBL | M0S550 | 0.0 | M0S550_MUSAM; Beta-amylase | ||||
STRING | GSMUA_Achr2P04590_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2141 | 36 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45300.1 | 0.0 | beta-amylase 2 |
Publications ? help Back to Top | |||
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