PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P04010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 641aa    MW: 70868.8 Da    PI: 4.6075
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P04010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.96.9e-092145125
                    NAM  1 lppGfrFhPtdeelvveyLkkkveg 25
                           l pGfrFhPtdeelv++yLk+k ++
  GSMUA_Achr2P04010_001 21 LSPGFRFHPTDEELVSYYLKRKSRD 45
                           579******************9875 PP
2NAM97.12.7e-304411854129
                    NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            ++ ewyfFs+ d+ky++ +r+nrat++gyWk+tgkd++v + + + vg+kktLvf+ grap+g++t+Wvmheyrle
  GSMUA_Achr2P04010_001  44 RDLEWYFFSPLDRKYSNRSRTNRATAEGYWKTTGKDRPVRR-GPRIVGMKKTLVFHAGRAPRGTRTNWVMHEYRLE 118
                            4569************************************9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100538.3751140IPR003441NAC domain
SuperFamilySSF1019414.97E-5016140IPR003441NAC domain
PfamPF023651.5E-2723117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MTVGAASSDR PPPPAAAATR LSPGFRFHPT DEELVSYYLK RKSRDLEWYF FSPLDRKYSN  60
RSRTNRATAE GYWKTTGKDR PVRRGPRIVG MKKTLVFHAG RAPRGTRTNW VMHEYRLEDE  120
ELTQAGISQD AYVVCRIFQK NGAGPQNGAQ YGAPFLEEEW EEEADMGPVL MPDGREDEFN  180
EATEKEYLQF SDFLQNEDLE NKHVNDSNFV ADLDRKDCVS LPGDATILLD EVPFTNMVEF  240
VNEPGQQINP TPIDDMEKKP LIEDFAHYHT RPNDKDEYVE LDDLADSANV VYPFSEEYGF  300
PIKACHAKNM HGAGGNSNLQ KILDVEEFFD TMSQNSDHLE SLQMSPVQEN FFVQPNDLNP  360
LAEGCPSSQQ LQEKTVFYDA PSDNPSFRHE NAPVNGLLYL PAYNPSGFEM VDDLLAYFDA  420
TDGSLHHDTM GFTGRPECIN SSDQSTFTGE VDGSNCPTSK ATAQVLDIDT VGGASSSASS  480
VAYKQSKGNY EEVAVRPDVQ MSDANDKTVT KHLLNMLGSI PAPPACAAEF PSGSGKSVAQ  540
IPGNHSASSI HVTAGFFHIC GSTMSENAGY WSLQKNGHVD LILSYNSMAD NLVRKTVGPG  600
CIAKNQVDVV SVMLRVGLYV FFLSALILTI SHKVGMSICG R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-37151409168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383919.10.0PREDICTED: NAC domain-containing protein 78 isoform X1
TrEMBLM0S4Z20.0M0S4Z2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P04010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-69NAC domain containing protein 2