PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P03680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 1134aa    MW: 124142 Da    PI: 7.7604
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P03680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.72.3e-1647148285
               trihelix   2 WtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                            Wt +e+l Li+a+r ++er   ++                     +++++W++v +++++ g+ rs++qC++kw+nl ++ykk++  e
  GSMUA_Achr2P03680_001  47 WTLHETLILITAKRLDDERRAGASsslahcspsaaagggpvavprSAEQRWKWVENYCWRNGCLRSQNQCNDKWDNLLRDYKKVRGYE 134
                            *************97777666543478888999999999999999***************************************9988 PP

               trihelix  69 kkrtsessstcpyfdql 85 
                             +   +   + p +  +
  GSMUA_Achr2P03680_001 135 ARA--GGG-ELPSYWAM 148
                            874..222.35555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-443126IPR009057Homeodomain-like
PROSITE profilePS500906.15643124IPR017877Myb-like domain
PfamPF138371.4E-1046149No hitNo description
SuperFamilySSF524908.93E-12439608IPR003008Tubulin/FtsZ, GTPase domain
Gene3DG3DSA:3.40.50.14406.9E-11504612IPR003008Tubulin/FtsZ, GTPase domain
PRINTSPR004239.1E-6535556IPR003008Tubulin/FtsZ, GTPase domain
PRINTSPR004239.1E-6629650IPR003008Tubulin/FtsZ, GTPase domain
SuperFamilySSF821851.44E-319951123No hitNo description
SMARTSM006982.59961017IPR003409MORN motif
Gene3DG3DSA:2.20.110.101.7E-2710001122No hitNo description
PfamPF024930.1310031019IPR003409MORN motif
SMARTSM006984.0E-610191040IPR003409MORN motif
PfamPF024931.6E-610211043IPR003409MORN motif
SMARTSM006980.4910421063IPR003409MORN motif
PfamPF024932.1E-510441066IPR003409MORN motif
PfamPF024931210711088IPR003409MORN motif
SMARTSM006985.710881109IPR003409MORN motif
PfamPF024939.210901111IPR003409MORN motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010020Biological Processchloroplast fission
GO:0009570Cellular Componentchloroplast stroma
GO:0009707Cellular Componentchloroplast outer membrane
GO:0035452Cellular Componentextrinsic component of plastid membrane
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 1134 aa     Download sequence    Send to blast
MSEAAEHSSA LALLHHHHQP PPHPHAQPPA SPSAAGGIVR CYRKGNWTLH ETLILITAKR  60
LDDERRAGAS SSLAHCSPSA AAGGGPVAVP RSAEQRWKWV ENYCWRNGCL RSQNQCNDKW  120
DNLLRDYKKV RGYEARAGGG ELPSYWAMER HERKERNLPT NLAGEVFEAL TDVLSRRAAR  180
RANATPVSSR PPPPPPSPPR LPQPPANPPP PPPLPPPPPP PPPPAQPSVS GTLGSLMPLS  240
VDQISSLIFL KLPPFSPFTC QRSDSSSSIV AVSLAGAAEP EAKRRRLRRL GSSVVRSATV  300
LARTLLACEE KREQRHRELV ELEERRLRLE EERTEMRRQG FAGLISAVNN LSGAIHALVA  360
DHRNGDHSPL SSLPMEAVAP GTSLAVFRTS CWRRGSRAGI PALRDFSGVR CRKRALRLRA  420
AATSSDVGRI DASRGSEPVE VIGIGSRKDA VIDFCLNSPT VSASRLRFWT IQMRDSFKVQ  480
LLQRCHGTGM VQGNVEFLLS LHQHPPAVIL VASSGHGLDH ITAIELLNVV KSAGGLAVAI  540
LLKPFNFEGQ RRQEEVKKLE IQLKDCSHFH IVVEADSLLK REVETLAEAL ETANNAVFLA  600
LSTISIMISE THLKFQNSPD GQMKELGPME IEKILQSYGE AKVGFGAGYD IKSSIKQAIV  660
HCPFLGGSIK DFNGPIIFTF ASASGVNESD VRSAIITFRQ IAESKSEIII STVQEPHLES  720
NLVLTTLLIV GSSQNVVSHK KGLLTSLALH FPFLSSLIGR GFSQPQNDVA VCASKPMVDA  780
SSPSDNGTIS NLDSAKCAID YLNQCPQEIQ NDVSTGITSS EVESEAKSSE WSHELVHENS  840
NETKNEQPGI QNDHPSIQNI GPGFDIAQLW AKECALHVTN KANEMETFCL PVGIKQTEIF  900
PDHYNDPRIP DNLDDCDGNK ESLNSQTVAS RGAVMDTGLE AVLGIYNSAV TMIKGGNSND  960
CRNGGLLSAR AASMLEAERE SEKSWTPVIE IQFKGGSYRG RCQGGLPEGK GRLTFKDGSF  1020
YDGMWRNGKR CGLGTLYYSN GDVFQGSWRD DLMHGKGWLY FHSGDRWFAN FWKGKANGEG  1080
RFYSKSGSIY FGNFKNGWRH DQGLCIDIDG LRWTEIWEEG ILVSRTQLDN AITG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282286KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4553244e-76AB455324.1 Echinochloa colona sh4 homologue gene, complete cds, strain: Ec/97-Pr-01.
GenBankAB4553254e-76AB455325.1 Echinochloa frumentacea sh4 homologue gene, complete cds, strain: Ec/95-PA-01.
GenBankAB4553314e-76AB455331.1 Echinochloa stagnina sh4 homologue gene, complete cds, strain: Ec/95-T-01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383564.10.0PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 isoform X2
TrEMBLM0S4V90.0M0S4V9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P03680_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-39Trihelix family protein