PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P02660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 27979.6 Da    PI: 6.6484
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P02660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien +nrqvtfskRr g+lKKA+EL vLCda+v viifss+gk++ey+s
  GSMUA_Achr2P02660_001  9 KKIENPTNRQVTFSKRRGGLLKKANELAVLCDAQVGVIIFSSSGKMFEYCS 59
                           68***********************************************96 PP
2K-box73.65.5e-2573168397
                  K-box   3 kssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                            + ++++  e +++++   e+a++k+e ++Lq++ ++++Ge+L+ L+l+eL+qLe+qLe+s++k+R +K++ll++q+++l++ke+ l++
  GSMUA_Achr2P02660_001  73 RVTNTHfEEINTHQQIFYEIARIKDEKDKLQESMKQYVGENLTCLTLNELNQLEEQLESSVNKVRVRKHQLLHQQLDNLRRKEHILED 160
                            55555666778899999*********************************************************************** PP

                  K-box  90 enkaLrkk 97 
                            +n +L + 
  GSMUA_Achr2P02660_001 161 QNSYLCRI 168
                            ****9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.3E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.959161IPR002100Transcription factor, MADS-box
CDDcd002657.57E-42272No hitNo description
SuperFamilySSF554552.22E-33284IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014867.1E-2481167IPR002487Transcription factor, K-box
PROSITE profilePS5129715.28585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTNRQVT FSKRRGGLLK KANELAVLCD AQVGVIIFSS SGKMFEYCSP  60
HSSMRQIMDS YQRVTNTHFE EINTHQQIFY EIARIKDEKD KLQESMKQYV GENLTCLTLN  120
ELNQLEEQLE SSVNKVRVRK HQLLHQQLDN LRRKEHILED QNSYLCRILS EHQAELEHTQ  180
AAMEHKVGDV PMLEHLENYY SGEPSESLLQ LSPQTHAFRL QPTQPNLQED SLQGHNLQLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19184182MEF2 CHIMERA
6byy_B1e-19184182MEF2 CHIMERA
6byy_C1e-19184182MEF2 CHIMERA
6byy_D1e-19184182MEF2 CHIMERA
6bz1_A2e-19184182MEF2 CHIMERA
6bz1_B2e-19184182MEF2 CHIMERA
6bz1_C2e-19184182MEF2 CHIMERA
6bz1_D2e-19184182MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383060.21e-179PREDICTED: MADS-box transcription factor 29-like isoform X1
SwissprotQ6H7111e-103MAD29_ORYSJ; MADS-box transcription factor 29
TrEMBLM0S4K71e-178M0S4K7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P02660_0011e-179(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-48MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li M,Sun P,Zhou H,Chen S,Yu S
    Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.).
    Theor. Appl. Genet., 2011. 123(3): p. 411-20
    [PMID:21512773]
  3. Yin LL,Xue HW
    The MADS29 transcription factor regulates the degradation of the nucellus and the nucellar projection during rice seed development.
    Plant Cell, 2012. 24(3): p. 1049-65
    [PMID:22408076]
  4. Yang X, et al.
    Live and let die - the B(sister) MADS-box gene OsMADS29 controls the degeneration of cells in maternal tissues during seed development of rice (Oryza sativa).
    PLoS ONE, 2012. 7(12): p. e51435
    [PMID:23251532]
  5. Nayar S,Sharma R,Tyagi AK,Kapoor S
    Functional delineation of rice MADS29 reveals its role in embryo and endosperm development by affecting hormone homeostasis.
    J. Exp. Bot., 2013. 64(14): p. 4239-53
    [PMID:23929654]
  6. Nayar S,Kapoor M,Kapoor S
    Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus.
    J. Exp. Bot., 2014. 65(18): p. 5339-50
    [PMID:25096923]
  7. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]