PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P01830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 307aa    MW: 34240.4 Da    PI: 6.9861
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P01830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  GSMUA_Achr2P01830_001 14 KGLWSPEEDEKLLNHITRFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                           678*******************************************97 PP
2Myb_DNA-binding50.45.2e-1667110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg ++++E++l+vd+++ lG++ W+ Ia+ ++ gRt++++k++w++
  GSMUA_Achr2P01830_001  67 RGTFSQQEEDLIVDLHAVLGNR-WSQIASQLP-GRTDNEIKNFWNS 110
                            899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.049961IPR017930Myb domain
SuperFamilySSF466896.36E-2911108IPR009057Homeodomain-like
SMARTSM007176.0E-121363IPR001005SANT/Myb domain
PfamPF002499.7E-151461IPR001005SANT/Myb domain
CDDcd001679.31E-111761No hitNo description
PROSITE profilePS5129424.862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2565117IPR009057Homeodomain-like
SMARTSM007173.6E-1566114IPR001005SANT/Myb domain
PfamPF002494.0E-1467110IPR001005SANT/Myb domain
CDDcd001674.09E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRHSSCYKP KLRKGLWSPE EDEKLLNHIT RFGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEEDLIVD LHAVLGNRWS QIASQLPGRT DNEIKNFWNS SLKKKLQQSG  120
VDPSTHKPLD QADKASGSSE SKLFISDGSH TGSFRHSPYS SNCGGEEKAS DGPLWFEQNC  180
RLLNVIPELS SLQLKPMLHL PHDTLLTPSQ FLEAGNPSNS SASSVNGSIG VELQSSILPW  240
PELLPHNLEE EPGDLKWSEY LNGAAITSAE IRCSYGVGKG GEELDPWHQD QQLLHPSLMH  300
GKNFQIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-29311616128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381238.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8VZQ26e-80MYB61_ARATH; Transcription factor MYB61
TrEMBLM0S4C40.0M0S4C4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P01830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.16e-82myb domain protein 61
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]