PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P01740_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

M-type_MADS

Protein Properties

Length: 341aa MW: 38528 Da PI: 5.4164

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P01740_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	68.3	7.1e-22	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr en+s rqvt+skR++g++KKA+ELS+LCd++ +++f+++gk GSMUA_Achr2P01740_001 9 KRLENSSSRQVTYSKRKAGVMKKAKELSILCDIDLVLLMFAPNGK 53 789****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.292	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.9E-30	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.45E-25	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.21E-25	2	82	No hit	No description
PRINTS	PR00404	3.2E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.5E-19	11	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.2E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MGRVKLKIKR LENSSSRQVT YSKRKAGVMK KAKELSILCD IDLVLLMFAP NGKPTVCVGD 60 RSNIEEVVAR FSQVSQQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGPS TQTVEELASY 120 LGSLHGQLLD VQKRLSYWAD PDEISDIDHI RAMEQSLKES LSRIQAHKEN FGRQLISVDC 180 CGQFQNDIHL HSGFNYEQGA SPVSWLHNND GQQLMLPQDS NLLSQRDIGC SADTPLQNCN 240 AYFSTGEQTD ANEQVQEGSL HEYSPNACLR LQLGGQYPYQ SYCQNLVSER TFKPDAENSL 300 QESTIDYQVN HFDASFQNWA STSATCGVSM YDEQSYTQVS F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	5e-13	1	92	1	90	MEF2 CHIMERA
6byy_B	5e-13	1	92	1	90	MEF2 CHIMERA
6byy_C	5e-13	1	92	1	90	MEF2 CHIMERA
6byy_D	5e-13	1	92	1	90	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009381113.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	5e-81	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	M0S4B5	0.0	M0S4B5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P01740_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4626	36	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	2e-83	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]