PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P00580_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 701aa MW: 78745 Da PI: 9.9608

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P00580_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.7	1.2e-26	55	153	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikegekkrtse 74 rW+++e+laL+++r+em+ ++r + k plWe+vsk++ +e g++rs+k+Ckek+en++k+yk++keg+ ++ + GSMUA_Achr2P00580_001 55 RWPRKETLALLKIRSEMDVAFRGATFKSPLWEDVSKVVtvslgsllhhlvklAEMGYKRSSKKCKEKFENVHKYYKRTKEGRAGQ--Q 140 8********************************************************************************96..5 PP trihelix 75 ssstcpyfdqlea 87 + + + +f+qlea GSMUA_Achr2P00580_001 141 DGKAYHFFSQLEA 153 5667****985 PP
2	trihelix	98.4	6.3e-31	367	452	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++ + +e+r++++ + plWee+s++m++ g++rs+k+Ckekwen+nk++kk+k+++k+r +e+s+tcpyf ql+a GSMUA_Achr2P00580_001 367 RWPKAEVHALIQLWTGLESRYQEAGPRVPLWEEISANMQRLGYSRSAKRCKEKWENINKYFKKVKDNSKQR-PEDSKTCPYFYQLDA 452 8******************************************************************97.99********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	3.3	52	128	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.738	54	126	IPR017877	Myb-like domain
CDD	cd12203	2.56E-23	54	133	No hit	No description
Pfam	PF13837	3.4E-16	54	154	No hit	No description
SMART	SM00717	0.05	275	426	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.864	366	424	IPR017877	Myb-like domain
Pfam	PF13837	5.3E-23	366	453	No hit	No description
CDD	cd12203	5.58E-28	366	431	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MLRIPGGTDP LHPPAEAASP ISSLPPPDAT ANLDELTPAV AGNEEAEPSG VPGNRWPRKE 60 TLALLKIRSE MDVAFRGATF KSPLWEDVSK VVTVSLGSLL HHLVKLAEMG YKRSSKKCKE 120 KFENVHKYYK RTKEGRAGQQ DGKAYHFFSQ LEAIHNRSGG GAITLSAAVS QPTPASFTAG 180 VLGPHGFSSS AAAANGINFP WNSSSSSTES DEEDTEEAGE NQEGRKRKRS RSSRARRQLM 240 NFSEAIMKQV MERQEAMEQK FLEAIKKREH ERMIREEEWR RQEMALLSRE QELLAQERAV 300 AASRDTAVIS YLQKISGQSK PLPAATTTPR QAQTPQEQKP PPPVPISSET DQGILGSGSF 360 EPPSSSRWPK AEVHALIQLW TGLESRYQEA GPRVPLWEEI SANMQRLGYS RSAKRCKEKW 420 ENINKYFKKV KDNSKQRPED SKTCPYFYQL DAIYRKKLLG HGGRGGGDGD GRGSVGVQQQ 480 QEQDPKCSPV PQERADNVVQ MQHQRQTPSE AKYKNGNDSN RNGGNSKQAQ TSNGGHPPSF 540 FEEGMNKVRR AYPSSISFVM QRPRRPQRLQ VPSCLWFSSY CNLHQFSLLP LGCTTFSFLR 600 QHNSHVRVLA ANTPISVLLL PCPICIIKRD LMWIKNPSAH ISYKMPFQIE RGSHRLRKRE 660 VKEMVYRFTH TACMCQSSFL YSWPQYLAGG NMMEFGAFSN H

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MLRIPGGTDP LHPPAEAASP ISSLPPPDAT ANLDELTPAV AGNEEAEPSG VPGNRWPRKE  60
TLALLKIRSE MDVAFRGATF KSPLWEDVSK VVTVSLGSLL HHLVKLAEMG YKRSSKKCKE  120
KFENVHKYYK RTKEGRAGQQ DGKAYHFFSQ LEAIHNRSGG GAITLSAAVS QPTPASFTAG  180
VLGPHGFSSS AAAANGINFP WNSSSSSTES DEEDTEEAGE NQEGRKRKRS RSSRARRQLM  240
NFSEAIMKQV MERQEAMEQK FLEAIKKREH ERMIREEEWR RQEMALLSRE QELLAQERAV  300
AASRDTAVIS YLQKISGQSK PLPAATTTPR QAQTPQEQKP PPPVPISSET DQGILGSGSF  360
EPPSSSRWPK AEVHALIQLW TGLESRYQEA GPRVPLWEEI SANMQRLGYS RSAKRCKEKW  420
ENINKYFKKV KDNSKQRPED SKTCPYFYQL DAIYRKKLLG HGGRGGGDGD GRGSVGVQQQ  480
QEQDPKCSPV PQERADNVVQ MQHQRQTPSE AKYKNGNDSN RNGGNSKQAQ TSNGGHPPSF  540
FEEGMNKVRR AYPSSISFVM QRPRRPQRLQ VPSCLWFSSY CNLHQFSLLP LGCTTFSFLR  600
QHNSHVRVLA ANTPISVLLL PCPICIIKRD LMWIKNPSAH ISYKMPFQIE RGSHRLRKRE  660
VKEMVYRFTH TACMCQSSFL YSWPQYLAGG NMMEFGAFSN H

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	119	KRSSKKCKE
2	226	235	RKRSRSSRAR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC025296	7e-46	AC025296.10 Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete sequence.
GenBank	AP014966	7e-46	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	7e-46	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBank	CT830545	7e-46	CT830545.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA218F06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380043.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	M0S3Z9	0.0	M0S3Z9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P00580_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	6e-60	Trihelix family protein