PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P00410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TALE

Protein Properties

Length: 305aa MW: 33462.4 Da PI: 4.5597

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P00410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.3	1.7e-10	240	272	23	55
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp++ee+++LA+k+gL+++q+ +WF N+R ++ GSMUA_Achr2P00410_001 240 PYPTEEEKAKLAEKTGLEQKQINNWFINQRKRH 272 8*****************************885 PP
2	ELK	29.8	1.4e-10	192	213	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +L+++L +KYsgyL++L++EF+ GSMUA_Achr2P00410_001 192 DLREMLQKKYSGYLSNLRKEFL 213 69*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	6.8E-21	46	90	IPR005540	KNOX1
Pfam	PF03790	6.6E-21	48	87	IPR005540	KNOX1
SMART	SM01256	2.6E-25	93	144	IPR005541	KNOX2
Pfam	PF03791	3.0E-23	96	143	IPR005541	KNOX2
PROSITE profile	PS51213	10.755	192	212	IPR005539	ELK domain
Pfam	PF03789	8.8E-9	192	213	IPR005539	ELK domain
SMART	SM01188	5.3E-5	192	213	IPR005539	ELK domain
PROSITE profile	PS50071	13.086	212	275	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.15E-19	214	281	IPR009057	Homeodomain-like
SMART	SM00389	9.3E-14	214	279	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-27	217	276	IPR009057	Homeodomain-like
CDD	cd00086	3.70E-14	224	276	No hit	No description
Pfam	PF05920	8.9E-18	232	271	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	250	273	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MEDLYSIHPG ILRGGDIPVI GSVSSCQVTN EASQVIGGGG GSDLTDMIKA QIANHPLYPS 60 LLSAYIECRK VGAPPEVAQL LEEIGSEGHS STGGGEIGAD PELDEFMESY CLALVRYKED 120 LSKPFDEAAS FLNDIEMQLT NLCKASSAAA TTTATGNSPS DEVIGTSEED QSCEDLESSE 180 GQEYGSRVAD SDLREMLQKK YSGYLSNLRK EFLKKRKKGK LPKDARLILL DWWNTHCRWP 240 YPTEEEKAKL AEKTGLEQKQ INNWFINQRK RHWKPSEDVR FALMEGVSDG SSGTMLCFGS 300 STTGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	216	LRKEFLKKRK
2	213	217	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269\|PubMed:10488233}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018677045.1	0.0	PREDICTED: homeobox protein knotted-1-like 1 isoform X2
Swissprot	Q9FP29	1e-119	KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBL	M0S3Y2	0.0	M0S3Y2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P00410_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1698	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	2e-62	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Park SH, et al. A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice. Planta, 2007. 227(1): p. 1-12 [PMID:17624547]