PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P28040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 361aa    MW: 39696.4 Da    PI: 7.8612
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P28040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-081171026
                           GGTS--TTTTT-SS-SS CS
                zf-CCCH 10 artGtCkyGdrCkFaHg 26
                           + t tCkyGd+CkF H+
  GSMUA_Achr1P28040_001  1 MMTRTCKYGDTCKFDHP 17
                           789*************9 PP
2zf-CCCH36.39.3e-124470127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                           ++++ C+++++t  Ck+G rCkF+H++
  GSMUA_Achr1P28040_001 44 PGEPDCPYYMKTQKCKFGIRCKFNHPK 70
                           5789*********************96 PP
3zf-CCCH37.93e-12101125327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            ++ C f+++tG C++G +CkF+H++
  GSMUA_Achr1P28040_001 101 EPVCTFYMKTGKCSFGTSCKFHHPK 125
                            789********************96 PP
4zf-CCCH34.53.4e-11170196127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++ C+f+++tG CkyG++C++ H++
  GSMUA_Achr1P28040_001 170 PGEPDCPFYLKTGSCKYGSTCRYTHPE 196
                            5789*********************95 PP
5zf-CCCH41.52.3e-13257279426
                            ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                             +C+f+++tG+Ck+G+rCkF+H+
  GSMUA_Achr1P28040_001 257 LECDFYMKTGQCKFGERCKFHHP 279
                            58********************8 PP
6zf-CCCH42.88.3e-14311334427
                            ---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                            ++C+f+++tGtCk+G+ CkF H+p
  GSMUA_Achr1P28040_001 311 VICSFYMKTGTCKFGAACKFDHPP 334
                            68********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.77119IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-6117IPR000571Zinc finger, CCCH-type
SMARTSM0035623218IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-54370IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.224371IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-54871IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-44970IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.88298126IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9101125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6101126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-6103126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07169197IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6169196IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-9171196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6174196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5175196IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-6253280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699253281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-7256282IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11257279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5259279IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-8307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723307335IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11311334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6311334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-5312332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMTRTCKYGD TCKFDHPLWV PEGGIPDWKE IPLIPTSESL PERPGEPDCP YYMKTQKCKF  60
GIRCKFNHPK ENGNASAGEL GAELQVSETA DISILPERPS EPVCTFYMKT GKCSFGTSCK  120
FHHPKDLQIL SNIQDSVRHG QLEPQGQNSK TYVPFTPALM HNSKGLPIRP GEPDCPFYLK  180
TGSCKYGSTC RYTHPERIIN PSLVAGLGQS FLPSAAANLS FGGLNPAANF LQNIDLRSAQ  240
ASISVIPTIY PQRPGELECD FYMKTGQCKF GERCKFHHPI DRSAPTSVLK QTPQQTVKLT  300
LAGLPRREGA VICSFYMKTG TCKFGAACKF DHPPPGEAIA MATIQGTAEG EETKDAPEVQ  360
Q
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420696.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-152C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLM0S3R10.0M0S3R1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P28040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-155floral homeotic protein (HUA1)