PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr1P27980_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 310aa MW: 34515.4 Da PI: 5.6303 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.6 | 5.1e-28 | 118 | 178 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +dDgy+WrKYGqK++ g+++pr+YYrCt++ gC+++k+v+rs+edp +++itY g H++ GSMUA_Achr1P27980_001 118 VDDGYSWRKYGQKDILGAKHPRAYYRCTHRhtqGCSATKQVQRSDEDPLTFDITYVGAHTC 178 59***************************98999*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.159 | 113 | 176 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-27 | 116 | 179 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-25 | 117 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-40 | 118 | 180 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 119 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MGSSTGSELE SPLVAELARA LELARQLESH LSNPAPIDLC KSVAPEILSS IQRSILMAKS 60 SDPDGEQQAA GDSPRSESSS PAFKDHDRKE LIKKRKTLHK WTNQVRLTPG TGGVEGSVDD 120 GYSWRKYGQK DILGAKHPRA YYRCTHRHTQ GCSATKQVQR SDEDPLTFDI TYVGAHTCLQ 180 KPQRASASAC QVPQRREHQK EDLLLSFRAG LKVKTEVAEL EEAQRQTCRQ GNEFHVFSAP 240 ALNLSPVASE SIYFSSFDDG INLQTSDSEI TEMISRSNSA SYLSLVDMDF MLEELDFERD 300 FQFDASSFFS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-23 | 117 | 178 | 7 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420628.1 | 0.0 | PREDICTED: probable WRKY transcription factor 53 | ||||
TrEMBL | M0S3Q5 | 0.0 | M0S3Q5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P27980_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11070.1 | 9e-41 | WRKY family protein |