PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P27980_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 310aa    MW: 34515.4 Da    PI: 5.6303
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P27980_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.65.1e-28118178158
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                            +dDgy+WrKYGqK++ g+++pr+YYrCt++   gC+++k+v+rs+edp +++itY g H++
  GSMUA_Achr1P27980_001 118 VDDGYSWRKYGQKDILGAKHPRAYYRCTHRhtqGCSATKQVQRSDEDPLTFDITYVGAHTC 178
                            59***************************98999*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.159113176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-27116179IPR003657WRKY domain
SuperFamilySSF1182903.53E-25117178IPR003657WRKY domain
SMARTSM007741.0E-40118180IPR003657WRKY domain
PfamPF031061.1E-26119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGSSTGSELE SPLVAELARA LELARQLESH LSNPAPIDLC KSVAPEILSS IQRSILMAKS  60
SDPDGEQQAA GDSPRSESSS PAFKDHDRKE LIKKRKTLHK WTNQVRLTPG TGGVEGSVDD  120
GYSWRKYGQK DILGAKHPRA YYRCTHRHTQ GCSATKQVQR SDEDPLTFDI TYVGAHTCLQ  180
KPQRASASAC QVPQRREHQK EDLLLSFRAG LKVKTEVAEL EEAQRQTCRQ GNEFHVFSAP  240
ALNLSPVASE SIYFSSFDDG INLQTSDSEI TEMISRSNSA SYLSLVDMDF MLEELDFERD  300
FQFDASSFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-23117178768OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420628.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLM0S3Q50.0M0S3Q5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P27980_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-41WRKY family protein