PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P27710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 335aa    MW: 35866.7 Da    PI: 6.9123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P27710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.4e-13268313655
                            HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +++Er RR ri +++++L++l+P+     +k  s +++Le+A+++Ik+Lq
  GSMUA_Achr1P27710_001 268 SIAERERRTRISKRLQKLQDLVPNM----DKQTSTSDMLELAIQHIKELQ 313
                            689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-16265325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.31E-13266317No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15267324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-10268313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGLSRYGSAP GSFLSGLADS VATGRGGEEL SAVGSEGMIG RFFSGDSPCL TSESSCRAAC  60
RGSDRDTPGA PATGGACLHG PYAPEALQVS AAGSPLVRHS SSPAGFFSHL LTDHGLSATR  120
AIGNYSQAGT DGIHAYANRR LRSQWSFSRQ DSLSQISELS IPEIGETDTC CNSSDEATGH  180
AGQSYISGNF QLGSWDDNNS IVFTAPPSKR AKDNNGDIVT GLSNVDSQFS LPRTSSEMSA  240
LEKYLQVQQD SVPCRVRAKR GCATHPRSIA ERERRTRISK RLQKLQDLVP NMDKQTSTSD  300
MLELAIQHIK ELQSQVQKLK QEQANCTCPE MQEKA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420274.10.0PREDICTED: transcription factor bHLH128
TrEMBLM0S3M80.0M0S3M8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P27710_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70713752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.11e-72bHLH family protein