PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P27460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Trihelix
Protein Properties Length: 255aa    MW: 28612.5 Da    PI: 10.5736
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P27460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.5e-1522110187
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                            +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++     + r   r+ +qCk++++ l+k++k +k++   r   ++s++p+f+
  GSMUA_Achr1P27460_001  22 CWSEGETSALVDAWGDRYIELNRGNLRQKHWQEVADAVnsrrgAGRRPPRTDIQCKNRIDTLKKKHKVEKARIAAR---AESQWPFFS 106
                            7*************************************976554455577889*******************9986...5668***** PP

               trihelix  84 qlea 87 
                            +l+a
  GSMUA_Achr1P27460_001 107 RLDA 110
                            *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2620111No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MEGREAAPTR PPNLAVLYRE DCWSEGETSA LVDAWGDRYI ELNRGNLRQK HWQEVADAVN  60
SRRGAGRRPP RTDIQCKNRI DTLKKKHKVE KARIAARAES QWPFFSRLDA LVGSSPAPAP  120
AAPKKPSASL SLALPLPFHR KGSSLSAATA VGPAEPRKKQ STAAATSSSR SETGWKRGRE  180
GEGNGIRELA RAIVRFAEIY ERVEEAKQRQ MMELEEQRME FVKALELQKM EIIVDSQVQL  240
AKIKRSRQSH TDSYL
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420066.11e-155PREDICTED: trihelix transcription factor ASIL1-like isoform X2
SwissprotQ9LJG83e-36ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLM0S3K30.0M0S3K3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P27460_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-39sequence-specific DNA binding transcription factors