PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P27460_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 255aa MW: 28612.5 Da PI: 10.5736 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.4 | 2.5e-15 | 22 | 110 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +W++ e+ aL++a ++ +l+rg+l++++W+ev++++ + r r+ +qCk++++ l+k++k +k++ r ++s++p+f+ GSMUA_Achr1P27460_001 22 CWSEGETSALVDAWGDRYIELNRGNLRQKHWQEVADAVnsrrgAGRRPPRTDIQCKNRIDTLKKKHKVEKARIAAR---AESQWPFFS 106 7*************************************976554455577889*******************9986...5668***** PP trihelix 84 qlea 87 +l+a GSMUA_Achr1P27460_001 107 RLDA 110 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-26 | 20 | 111 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEGREAAPTR PPNLAVLYRE DCWSEGETSA LVDAWGDRYI ELNRGNLRQK HWQEVADAVN 60 SRRGAGRRPP RTDIQCKNRI DTLKKKHKVE KARIAARAES QWPFFSRLDA LVGSSPAPAP 120 AAPKKPSASL SLALPLPFHR KGSSLSAATA VGPAEPRKKQ STAAATSSSR SETGWKRGRE 180 GEGNGIRELA RAIVRFAEIY ERVEEAKQRQ MMELEEQRME FVKALELQKM EIIVDSQVQL 240 AKIKRSRQSH TDSYL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420066.1 | 1e-155 | PREDICTED: trihelix transcription factor ASIL1-like isoform X2 | ||||
Swissprot | Q9LJG8 | 3e-36 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | M0S3K3 | 0.0 | M0S3K3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P27460_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58630.1 | 3e-39 | sequence-specific DNA binding transcription factors |